MmuEX6012695 @ mm9
Exon Skipping
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108643085-108648961:+
Coord C1 exon
chr7:108643085-108643194
Coord A exon
chr7:108644151-108644206
Coord C2 exon
chr7:108648902-108648961
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCTCCTCCCCTCAGTGC
3' ss Score
11.2
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AGAAGCTGTGATCTCTCAGAAGCGGCTGAGTTGCAATGGGCTGGGACCTTCGGACCTACTGGGAAAGCCCTTGGCCAGGCTGGTGGCTCCACTGGCTCCTGACATGCAAG
Seq A exon
TGCTGGTCATACCCCTGCTGGACAAGGAGACTGGAAGTGTGGCAGCTGTCATCTTG
Seq C2 exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAACAGAGCTTGCAGGTGGTAGAGAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTCTCAGAAGCGGCTGA
R:
CCTGCAAGCTCTGTTCCTCAC
Band lengths:
148-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: