DreEX0006597 @ danRer10
Exon Skipping
Gene
ENSDARG00000079064 | PDE2A
Description
phosphodiesterase 2A, cGMP-stimulated [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr15:47494555-47505945:-
Coord C1 exon
chr15:47504759-47505945
Coord A exon
chr15:47501418-47501473
Coord C2 exon
chr15:47494555-47494614
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGCTCCTCCGTTCAGTTG
3' ss Score
9.4
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
TCGAGTGTGTTTATGATAACATTGAGTCATGTTGAAAGCGTTGTACAGATGTTACTGAAATGTCATCTTAACGTTCTGCAGCCATAACAAGTATTGGACCATCCAGATCAAGAGTAAATAAACATGGCTGGTGTATTAGCAGTGGTTCAGTGCTGATGTTTACAGTATGACATTTGTAAAGAGCAGATATTGAACGTTCTCTTAATGTTTGCTTATAACCTTGAGAGAACCTTCAGAGAGTGTTCAGTTGATCTGCTGCAGTGTGTTTGGTGTTGATATTTGGCATGTGTGTGCGCTGAAGTGTGTGTACTTGTTCTGATGTTTACCGGTGTGTGAAATGAGACTCAGTGTGTCCTGACGTGTGTGTGTGTGTTTGAGTGTGTGTTTCAGAGATGCGGTTCAGCAGCAGAGGAGAGTCCAGTGCAGTGGCCTGAACCCAGCAGAGCTACACCACACACAGAGAAGTGCACTGACCACACCACTGCCCGCTGTCAGACGAG
Seq A exon
TTGTGATTGTCCCGCTGGTTGATGCTGATGAAGGGAAGGTGATCTGTTTAATTCTG
Seq C2 exon
TTGAGCTGTAAAGCACTGACAGAACAAGATGAACAAAACCTCACCGTCCTGGAGAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079064_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGAGTCCAGTGCAGTG
R:
TCTCCAGGACGGTGAGGTTTT
Band lengths:
148-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]