RnoEX6004023 @ rn6
Exon Skipping
Gene
ENSRNOG00000019560 | Pde2a
Description
phosphodiesterase 2A [Source:RGD Symbol;Acc:620965]
Coordinates
chr1:166608801-166614583:+
Coord C1 exon
chr1:166608801-166608910
Coord A exon
chr1:166609770-166609825
Coord C2 exon
chr1:166614524-166614583
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTCTCCTCCCCTCAGTGC
3' ss Score
10.95
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
AGAGGCTGTGATTTCTCGGAAGCGGCTGAGCTGCGATGGGCTGGGACCTTCAGACCTACTAGGAAAGCCCTTGGCCAGGCTGGTGGCTCCACTGGCCCCTGACACGCAAG
Seq A exon
TGCTGGTCATACCCCTGCTGGACAAGGAGACTGGAACTGTGGCAGCCGTCATCTTG
Seq C2 exon
GTGCACTGTGGCCAGCTGAGTGACAGTGAGGAGCAGAGCCTGCAGGTGGTGGAGAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019560-'25-15,'25-13,27-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTGATTTCTCGGAAGC
R:
TCTGCTCCTCACTGTCACTCA
Band lengths:
145-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]