HsaINT1031329 @ hg38
Intron Retention
Gene
ENSG00000256633 | RP11-169D4.2
Description
NA
Coordinates
chr11:72584572-72587979:+
Coord C1 exon
chr11:72584572-72585056
Coord A exon
chr11:72585057-72587800
Coord C2 exon
chr11:72587801-72587979
Length
2744 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCCTATCTTTGTTTCTCCAGGCC
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGAAGCAGAGGATGTTGCGCGTGCGGAAGCCGGTGCTGTCGTCCACGCCGCGGTAGAAAAGCGGATGGGCATATGCGTCAGGGATGTTCAGGATCTGGCCCGTGGTCGCCACGTGTCCCGCGATGCCCTGATCGGCCGGGATGCGGATCTCATAGCTCTGCCGGAGCAGAGATGGAGTCGAGAGGAAGAAGTTAGTGACCCGGCCACAGAGGGGACTGTTAAACCTCGGGCCGCTCCCCAGCGCCGCCGGCGGACTCCCGGACACCCCTAGGGCCACATACTCCCTCCACACCCTCTCACCTCATCATCCACCACGCCCCCGTCGAACACCTTGGCCACCAGCTCATTCTGATCCAGCAGGAACACAGAGCAGCTGTGGAGGGAGGGGTTTGGTCCTCTGGGGCCTGACAACCCCCTCTGATCGCCCTCACGTCCCATAAGGAGGCAAAGGCCGGATTTCCGAGGCCTGGGAGGAGTGCTCCAAG
Seq A exon
GTAAGACACTCTGCTCAGGGCTGGCTGGCTCCAGAAACGTGTCCATTCAAGTGTTTTGTTTTTTTTTTTTTTTGGAAGCACCTACTATGTGCCAGGCACTGTGATAGGAGCTGAGGATCCAAAGCCAGCCCTGTCCCTGCTGTATTGGAGCCTACAGTCTAGCGAGGGAGACAGGCATGAAATAAAGGATCCCTCAAAAGGTGATGAAGTCCCGCAGAAGGCAGAGAAAGGGAAGTGGGTGGGGCAGGAAAGGAGATGATGGGGACTGAAGGCCACAGCCTCTCTCGCCCTGTCCCCTGGGTAGAGTCACTCACATCTCTGCGTTGCTGAGGTTTCTGGCCTCCGTGATGATCTCCTGGAGCAGGACAGAGACGTCATCTGGGGAAGGGAGAAGACCAGGCAGGGTGAGACCAGGCTGCCAAGACCTCCCGCCTCTCCTCTGCAAATGCCAGCCCCCATGCCCACACACAGCCAGGCAGAGAGAACAGTGCACTCACCCAGGTGGGTGAAGAGGTTCTTTGCCACTTGGAGAAGAGCCTGGAATGAAGGAAATGGAGATCATAGGGGGGTCGGGGTGTAGGGGTCACCCTATCCAACCTCCTGCCTCCAACAGCACCCGGGTCTTCTCCTTCCTTCCCTAGGGCTCACTGGACAAGCCAGAAACTGTCAGTGTCTAATTATATCATTTGGCTACTAAGTGAAGGAGTGAGGGAATAGCCCCGGTGCAGGTGAGGAGTCTCCTGAGTGTCTCAGCCGCCTTCACGCCAGCTCTAGCTGCCTAGGTGTTGCTGTAGTGCCCAAATTGAACACTAGAGGGCGATCACATACAGTGCCTGCGGGCAGTGGCGCGGGTCCTGAACAACTGCAAGCCTTCAAGTTATGAGGTTATGGAGCCACCTGGGGAAGGGCTGCCACCAGTCCAGAAAGACATGGGCATTTCCCTTCTGAATGGCTCTCGGGGCTGAAAACTGAGCGAGTCGGTGCCCGAGAGAGGCTGAAGGCAGGTCACTCACCTGGCACTCACACTTGAGTTTCTGTTCCTTCTGGAAGGCCAGGGTGCTGGTGAGCACGGTGCTGGTGTAGTGGAAGCAGTGCTGGATCACATGCTCGTCCTCGTCGGTGAACCTGGAGGAGGGGGTGGGCTCACTCAGGAGGGAAGGGAAGACTGGCTTCTCTCCCCACTCTCCTTACTTCTGTTCCATCAGAAGCCCACAGGGGTACCCACCTGCCAACTATATAACCACTGCACAGGCCCTTGGAACAGCTTCCCACCCCCATGACCCTGCAGACTGGGGGCTGCCCAAGGGGAGGGCTCCAGTCCTCCTTAGATGCTTGAAACCAGAGCCATACCTCCCGTCTCTGATTTGGGATTTACCCAGCCCAAAGCTGGGTCTCCTCCCTCAGACTAGAGATTGCCTGGGCTCAAGCTGGTGTTCTGCTCTTCCCCAGGCACACCTCCAGCCTTGGGGAGGGGCGGTGGCACTGCCCTATCTTGTGCAGCTCCTGTCACTACCCCACTCTCCCTGGACTCCGCTGGCCCTGATTCGGTGCCTCCAGAAATCTTAGGGTGGTGGTGTGGAGAGGACTGCTTGCCCTGCTCATGGAGCTAGCTCTGGTGAGACAAGATAAGCCCCAAATCCTGCTCACGTCATTCAATCTGGCCACCAAATGATTTGTCACTGGGGAGCTGCATGGGGCTGGGTGGACCAATGGTGTGGGTCATGGGAAGAGCCTGCCTTAGCCCACATCACGCTGCCCTGAGGTGTCCCTGCCTAAGCCCTTCCCCACTTTTTGGCTGGCCTTGGTGCTCCACCCTGGTGGGGCATCCCCCATTCATGCTTGCCATCCAGTGATTCGGATCTAGATCCCATCCCCACCATCCTGGGTCTGTCTGCACACCTTTCTTACATTTGTGGTCCCTCAGCTAGCCCCACCCACCTGTCACCCCTCAACCCAGAACATCTCTCAGCTTCAGCCACACAAAGATCCTCATCATTCTGAGAAAACCTTGGGCTCTTTCACACCTTCATGCTTTTTTTTCTACACTGTTCCCTCGGCCTAGAATACCCTTCTCACTCTCTTCCCTCTATGCCCTGAAAATGAGCTTCGAGTCTTATGAAATGGGGCCATGACTATATCACCCATGCCCAGTGCAGAGCCTGGTACAGAGGAAACACTTCGGAGGTCTTTGCTAATGTCGTCAGTGTATCCTATCCCTGGCCTTGCCACCAGCCCCATCCCACTCACAGCTGAAGGGCTTCTGGAGCCCCTGTTCTCTGGCTACTTAGCTGTGTTTCAGGAAGCTTCTCTGTAGTCACTGCACTGAGCTGAGCCCCACCCTGGCTCATGCAGTCATTCAACACTCACTCCCTGAAATGCGTGGGACACAGAGATAGCCCTGCCCCTGCCCTGGGCCTCAAAGCTGCCACCAAGGCCCCATCCTTATTTCCTGCTGATACCACCTCTTCTCCAGCTCTGGGGCCATCCTAGAACCCAATCTCACAGCCAGCAGCAAGAAGTCATGGCCCCTGCTGGACCCCCATTCACTCTACCTTCCCTTCCCCAAAGGCCTTCCCAAGGCCATCTGGTCAGCACTGGGATGGCAACATTAAGTGCTCAATATTTGTTTGCTGAATGGCATAAATTCTCCCACCATTAGGATGCCCACAAGTTCCAAATGCCACCAATCCCACATTCTCCCTGCCTCAGCTGATTCTGCCTTGCCCCTATCTTTGTTTCTCCAG
Seq C2 exon
GCCCACCCAACTGTCAACACAGTTCCATGCTGGTAGGTTCTGCAGCTCAGACCTAGGACTCCTGGATCTCCACCCTACCCCAGCAGACCTCAGGCCCGGGCTCTGACACCTACCTAGTCCCAGGCTCTCTAGTGTCCACCTCCTGCAGGAGCTCCAGGCCCTGAAACCCAGCCTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000256633:ENST00000545254:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains