HsaINT0122185 @ hg19
Intron Retention
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:8786]
Coordinates
chr4:661645-664681:+
Coord C1 exon
chr4:661645-661795
Coord A exon
chr4:661796-663834
Coord C2 exon
chr4:663835-664681
Length
2039 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
3' ss Seq
TCTTCTGTCTTCTCTTGCAGTAG
3' ss Score
11.01
Exon sequences
Seq C1 exon
GAGTTCTCTCGTTTCCACGAAGAGATCCTGCCCATGTTCGACCGACTGCAGAACAATAGGAAAGAGTGGAAGGCGCTGGCTGATGAGTATGAGGCCAAAGTGAAGGCTCTGGAGGAGAAGGAGGAGGAGGAGAGGGTGGCAGCCAAGAAAG
Seq A exon
GTCTGGCTCTGTGTGGCCTGTGGGGCAGGGACTCGGTGACTCTCCCAAGGCAAAATGAAAAGACAGGGCACAGAGCAGAGTTAAAATGGAGAAAAGCAGAGCCACTTTCAAGAAGCCTCGAGGTGGACAGGGCCACAGTGCAGGGAGAGAGGCCACGGCGGGGGAGAGTGGCAGCTGACTCCACCTCGGTAGCAAACCCGGACTGAAAAATTTCCTCTGTTCCTAGCCAGTGAACCCCATTTTTCAAGAAAGAAGTAACCATATCTTATGTCCTTTATAAAGGACTTAGTTGCAACAAGTCAGCACACCCCCAAGTTCAAATCCCAAAGGCATCGTGGTCTTGCCATTGGCCCGCACTTGGCTACCTTAGCTCTGAGGTTTGGCTTGCTATTCCCGCTGCTCCCAGTATCCCATGCTATTCCCGCTACCCCATGCTGCTCCCACTACCCCATGCTGCTCCCACTACCCCATGCTGCTCCCACTACCCCATGCTATTCCCCTACCCCATGCTAGTACCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTAGTACCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCGCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCCTACCCCATGCTATTCCTGCTATGCCATGCTATTCCCCTACCCCATGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTGCTCCCACTACCCCACGCTATTCCCCTACCCCATGCTATTCCCGCTATGCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCTATGCTGCTCCCACTACCCCATGCTATTCCCACTACTCCATGCTGCTGCCACTACCCCATGCTAGTCCCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCACTACCCCATGCTATTCCCCTACCCCATGCTATCCCCCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCACTACCCCATGCTATTCCCACTACGCCATGCTATTCCCGCTACCCCATGCTATTCCCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACGCCATGCTATTCCCACTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATTCCCGCTACGCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCGCTACCCCATGCTATTCCCCTACCCCATGCTATCCCCCTACCCCATGCTATTCCCGCTATCCTATGCTACATAAACAAGGCGACTTCAGGACTATGGAAGGCCAGGATGAGCATAATCAGGGCACAGTGTCAACAGAGGCTAAAGCACTAAGAAAGGCTCAGCCCAGCTAATCGGCTTGGGCTGGTCACAGACCCAGGTGCTGTCCTTCCTCCTGCAGGGGTTGGTAGAGGTCACACCAGGCAGGAGGGAAGGAATAGGGCTGGTGTGCACAGGTGGTTCCACTCACCATCTTCTGTCTTCTCTTGCAG
Seq C2 exon
TAGGCACAGAAATTTGCAATGGCGGCCCAGCACCCAAGTCTTCAACCTGCTGTATCCTGTGAGCACTGGTCCCATGGGGACCCTATGGCTCCCTCAATCTTCACCCACTAGGATTTGGGTTCTGCCTGTGGCTATTTGCTACAAGAGGTTAGGAAGCCCAAGAAAATGACTGAAGATCATTCTGGATATTTTAATTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCCGTGGCACGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACACATGGCTAATTTTTGTATTTTCAGTACAGATGGGGTTTCACCATATTGGGCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCACCCGCCTCAGCTTCCTGAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCTGTTTTTATAAACTGAAGCCAACTGTGAATAAACTGTAGCCTACATTACTCATCCATTTTTGGATAGTTACCACTGGGAGACCTTTGAAAAGGGTCCATGAACTCTGAAATCACTGAGAACATTTGCAGCCACACATGTACATATGTGTACACAGGTAGACAGATGGACACAGGCCGTTTCTCATCCAGTTTAGGAAAACACACATGCTCAGGAATTCAGAATAAAATAAACAGAAAACTACTTGCCCATTATCTGTGGTAAAATGATAGCGGAAGCCACACTACATTTGACCCATCAGAAAATTCTGCCAGAGAGGTCAAGGCCATGAGTAAAGCGGCCATCCAACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256-PDE6B:NM_001145292:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(23.5=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)