HsaINT0122720 @ hg38
Intron Retention
Gene
ENSG00000148459 | PDSS1
Description
decaprenyl diphosphate synthase subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr10:26742497-26746798:+
Coord C1 exon
chr10:26742497-26742577
Coord A exon
chr10:26742578-26746332
Coord C2 exon
chr10:26746333-26746798
Length
3755 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTGTTCTGTATCTTATAGAGT
3' ss Score
9.59
Exon sequences
Seq C1 exon
TTCCCAGAAATGAATGCTATGATCATGCGACGGTTCAGTTTGCCTGGAGATGTAGACAGAGCTCGACAGTATGTACTACAG
Seq A exon
GTAAGACTGTTTTTTTAAAAAAAAGGCAGCAGCAGGAACAACGTGGCAAAATCCTTTAATCCAAAAATGTAACATTAACTAAACATTAAATTATAGATACAAGACTGTTTGGTCAACTCTTGATGTGACAAAAACTGAGAAGGGAAAACTCATTTTTCTGATTTTTTATTTTCATTTCTCTTCTAGACTACTTACGAAATGTTTTGTTTTAACTGGTCTTAGGTAAGGCACAGACATTAATATCTTTTAAAAGGTACCTAAGTGATTGTGGTGAACTGTTAGTGTTGAAACCCAGTGGTGTGGAACCAGCCTTCCCTGTGTCCATCAACAGAATCACTGGGCCCCCAGTCACCCAGCCTCGGCTCCAGCCTCATCCATGTCCCCATCCATGACCCCATCCGGGCTGCTGCTGGACTGCTGCAATAGTCTACTCATAATTGGGCTTTCCTAGTCCATCCTACCTGTTATAAAAGTGTGACTAAAGAAATGATCATTGAAAACAATAAACCAACACAGGCAAACTATACATTTATATAAATGTTTTTCTTTTAAAGGGAGAACCATTTAACCCCATTCAGGGGCTAGTGGCTTGCTTTAAATATATTGCCACGTATCTTCAGAACTTTTCTGTGGAAGCCAGATCTCTCTGCATGACTTGAGTTTTGGTGACTGACTCCTGTGAGAATGAGCCATTTCCAAGTTCACTGTCATTTGCAGCCAACAGATCTACTGGATGAGTCGGAGTGAGCAAAAAATCATTACAAAGCAAGTGTGGCATGAGATCTGTACTTAGTGTAGTACCTGAAAGACTTCCAAATAATTACCTTCCAGATTCTTAAAAAATTTAAAAAGCAACCCCAACCCCTAAAAGGTTATTTTTCTCTCTTAACTGACTATACTGTTAAGCCCCATTATTCACTACGGGTTACTGCCTTTTTTGGAGAATGGTTTAAACGTACTATTAAAAACTATGGCAGGGAGCTGGAGCTGATAAAGAAGTCAATATTCCCTGGGAGAGGTTCTGGCTTCAGAAATAATGGTATTATTGAAAGCTAGAGTGGGAAGTGGAACTGAAAAGAGGGAAGTTAATAGTAGCACCTATGGAAAATAGCAAAGTTCCAGCAATCCTAGCCAGAAACACATTTAGAGGAAACAAAAATCCACGGGAATGTTCTCTGAACAAATTCTCCAAAATTCTAGCTCCCTGTTCACCCACAGAGCTTCTAGGCCTATTCCCTCATTAAATATGAATAGACAACTCAGGGTTACAAATAAGTTGACTAAAGCTTGCTGAACAAAAGAGTGGGACCAAAATAACAGGGGGAAAAAAAAACAGGAAAAACGTAAATAGGAGGATCCAAAAAGATACCACATTCACAAAACAGTACAGGATCATACTTTTTAAATGAGTAAGAGCAAGTTCTAAGAAACTGAAAATGACTGAAGAACAAACTCCAAAGAAGGGCTGCAATGTGAAATTGTGGAAATCCTCCCAAGTGTAAAACAGAAAGGGGGAAATAGTGAAAAATAACAAGAGCTACAAGGACCAGTACCATCATGTAACAAGTATTTCAGGAAGAAAATAAACAAAAAAGTGGTCACTTATGCTAGAAAATGGTGTCAAAACTGGCTCAATGAATAGCAAAGATACTGGATACTAGAAGGCAGTGGAGGAAGGTCTTCCAAGTGAGGATGAAACATTTTAAACCTAGGATCCATTAAATCCGAAGGCAAAAGAAAGTCACCACACATCAGGACTAAAATGTTGACTTCCCATAAACACTATTTTATTTTATTTTTATTTTATTATTTTATTTTATTGTATTTTTCTTAGACTGAGTCTTGCTCTGTTGCCAGGCTCAAGTTGCAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTGATTTTTGTATTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCATTATGGTCTCGATCTTGACGTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGAATACAGGCGTGAGCCACCGCGCTCAGTCCCCATGAACACTTTCTGGGTAGGTTATTTGCAGATGTACTTCAGGAAAACGTGTGGAAAACACTGAGAGAAGGCAGGCTTCTGTACAAAAAGGAACAGCAAACTAAAATATGTCATGTTTTGAGCAACTGGTATAGAAAATCAGATGTATTTCAACCACAATGTTAGGAATATTCCATTTCTAAATGTCAGAGGGGTCCGGGCGCAGTGGCTCACACCTGTAATCGCAGCATTTTGGGAGGCCAAGGTGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAACATTAGCCAGGCGTGGTAGTGCACGCCTATAATCCTAGCTACTTAGGAGGCTGAGGCACGAGAATCCCTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCACGCCACTGCATTCCAGCCTGGGCGACAGAGCAAGATTCCATCTCAAAAAAAATTTAAAAAAAATAAATAAATGTCAGAGGGATCATGAGCCATGGAGAAGGAAATAGAATTATAGTATATGACTTGATTCTGCAATAAATATTTTTACATCATAGAAATGATACTTTATTAGTATTTGGCTTTTAGAAAGAACCAATATTTTAAAACATGGTTATAGAATAGGATGTAAATATCTATAGTCTAACAAACAGTATAGTTAAAGGAAAGGACAAGAGCTCATAGAAGATAAAATCTGAAGTTGATGCTACCTAACAGAAGTAATCAACAAAACAACTAAAGACAGCAGTGTGATGATGAGGCGGCACATTGTGGGTGGGCTAAACCCTCATCTTAACAAAAAGGTAACAGGTAATAACTAAAATTGGTAATCAAGAAATAAAAACTAGGCTGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTGGCCAACATGACAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGACAATCGCTTGAGCCCGGGAGGTGAAGGTTGCAGTGAGCCAAGATCATGTCATGCACTCTAGCTTGGGTGACAGAGTGAGACCCTGTCTCAAAAAAAAAGAAAAAAGAAAAAAAAAACTATTGGATAAAGTGAGTGCCTTTGGAAGAAAGGAAGCTGATTTTCATCATAAACCCTCTGTACTTTCATTTTGTTATGTCTTTATTCTTTATTTTTTAAGTAAGTTTTACTTGTGTTTTTTTTACATTTAAAAATGTTGTATAAAGATACTTTGTACATAGAACTTCTGAGAAATTCTAATAAGTAAAAATTAGGGGAAAACGAATGACTATGTAATATTGATGAGCTAGTTGCTTTGCATGCTAATAGAATAAAAATTTGCTTCAATATGAGAAAAAGGCCTAAAGGAAGTTAGCACTATGAGTCGGGAAAAGAACATTAGAGATGTAGTTTGACTGTTAACTGTAATCCTCAGCTCATCTGATCTCAAAACTATGTGTTCATTTATTATAGCAGGAAGTTAAAACGCTGATTCAGTCAGTGACAGGCATCTGTTCTGTTTTGTTCTGTATCTTATAG
Seq C2 exon
AGTGATGGTGTGCAACAAACAACCTACCTCGCCCAGCAGTACTGCCATGAAGCAATAAGAGAGATCAGTAAACTTCGACCATCCCCAGAAAGAGATGCCCTCATTCAGCTTTCAGAAATTGTACTCACAAGAGATAAATGACAACTCTTTCTGTTCTTTCTGGCAGCTATCTTACCAGACTGTGCCTAAAGAATTTTGTGGAATACACTTTGTTTGCTTCATGTGCAGATAACCAAAAATCATTTTAAAAGATATCAAACTTATTGATGGGCAATTTATTTTTTTTTATTGCAAAAGTTTTTTCAGAAAACTTTTTAAATGTAATTAATAAACCACCTGAATCTGTCATTCTAGTCCTATAAATTATAATCAAGGTATCTTGATGGTTATATGTGGTATTGTTTACACTGTTAATATCCACATGTAAGGCCATTACACAAATAAATAACCAATGTTAAAATTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459:ENST00000376215:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(10.3=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=PD(4.2=23.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development