RnoINT0109409 @ rn6
Intron Retention
Gene
ENSRNOG00000048849 | Pdss1
Description
decaprenyl diphosphate synthase subunit 1 [Source:RGD Symbol;Acc:2319976]
Coordinates
chr17:90033539-90037972:-
Coord C1 exon
chr17:90037892-90037972
Coord A exon
chr17:90033879-90037891
Coord C2 exon
chr17:90033539-90033878
Length
4013 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTCTGTTGTCTCCTGCAGAGT
3' ss Score
12.32
Exon sequences
Seq C1 exon
TTCCCAGAAATGAATGCTATGATAATGAGACGGTTCAGTTTGCCAGGAGATGTGGACAGAGCACGGCAATATGTATTACAG
Seq A exon
GTAAGATTTTTTAAAGGATGATTTTAAATCCAGTTTGTGCACATGCATGTGCCCAGCACCTAGGAAAAGTCATGACAACTATTAAGTGTAGGTTCCTTCTGACTGTCTATGTCCCAGGGATCAACTCAGTTTATCAGGCTCCGCAAGCAGGCTTTTACTCATTGAGGTTAGGTACTTGGCCTATCCCCAAGTAAGACCATCTTAAAAAATACAAAAGGCAACAGCAGGTACAGTAACAAAATTTTATACAGAGCCAAGTTGGTCAACCCTTACCAGATTTGACAATAACTAGGAAAACTCATTTGAAAATTTAAAATGCTATTTTCTTTTGGTGCCTACGTGCTGTACTTGCAGGAGCTGGTTCTCTTCTTACATCATGTGGGTCCTGGGGATTTTTTAACTCATTCAGGCTTGGCAGCAAGCTCATTTACCTGCTGAGCCATCTCAAAAGCCTCCCCCCCCCCACCCAAAAAAAAAAAAAAAACCCAATTAATATAATTTCTCTTTGAAGTTATTCAGTAATCTTCCTATGCAGGCCAAGCCAAGTGAACCCTGTCAGGTTGAAATGAGCTGTCCTGTGTCCATGAATATCACCACTGTGCTGTGCCTGGAACAAGCCCCATCCCTGCCCAGAGCTACAGCTCAAGGGTCACACAGCTCGAGGGTCACAGTAGCTAGAGGGTCACAGTAACTCATAAATGCCTCTCCTGCTAAGGCAATGGGTCATTGGAAAGACTTGAGCAAACACAGCGAGCAAGCCGCAGTTTACTCTCCTCAGGACCCAGAGCCATGTTTTAAACGTGCTGTGTACCTTCAGAGCTTTCTCCTAGATGCTGAAGGCTTTGTTTTCTTTAAAGAATTATTTCCAGAGCCAGTGGGTAAAGGAACTTCCTGCAAAGCCATTCGACCTGAGTCTGATTTTCAGAGACTCACGTGGTGGAAGGAAAGTCAACTCCTGCAAGTTTTCCTCTTATATCCATATGTACCCTGTCATGTACACGCCCACACACTAAACACGTACATAAATGGATTGTTCTTTTTTTTTTTTTTTAAGTAATCAGCTTCCAAATAAAATTATCTGGAAGCCACACGTTAAATGGAATAGAGTAAGCAAACAAGAATTTGTAAGCAACTGCGGTCTAAGATCTATATTTAGTGTACAACACAAGGAAGAATTCTTAATGATCATGTTTCCAGTATTAGTGAGTGCTTGGCAATGCTATAAAACCTCAAATCCAATATTCATCAGCGGGGCTCTGGCCTTAGAAGTAATAGTGCAGCAGTCCTTTGGTATCGCTGAGGGTTGCAGAACCCCCCTTGGATCTCAAAGATGAATGGGTGTTTAGATATTTAGACTATTGCTCTATACTTTATATTGTTTATAATACCTAGTTATGATTGTGTAGATACAGCGAATGGACAAAGACGTGCATGCTCAGGTTATGTCCAACATGGTTTTAGAAAGTGATTCAAGGACTCAAGTGATTGGTGAGACTGAAGGAGTGAAATTAATTGTAGTTCTCATAAATTATACATGCTCTTCCTTTCAGAAACCACCCTGTCTGTCTGTGTGACACAGACATGCACTTAAAAACCACAAAGGGGTCTAAATTCTAGATCCTTATACACTTGATGGGGCTTCTAAATCCTATTCTTTCATTAAGTATTGTGGACAACTGAGGATTACTAAGGAGTTGGTTAAAACTTACTGAGCAGAAGAAAATGTGAATATAAGGATACTGAAAACTATAAACAAGAGAATCTAAATCTACAAAGATACTGAATTATTAAAACAAGACCTTTTTAAAGCTCGCTCGTGCCAAGTACTGAACAGTTTTGTACTTTAGCAAAGACTCCAGCACCAAGCCCACTCAGCTCTAGTCCATTACTCAACTCAGATAGAATAAGAAATAATTCTAAGGACTGACAAATGGGATTATATTTAAAAGCTTCTGCATGATCAACAGACAATATGCACAAGAAAAAAAACTACAGACTATATATCTAACACCCCAAATATATAAAGAACTGAAAAATTAAATGATAATTCAATCATTACTAAAGATATACACATGGCCAGTAAGTTTTTGAAAACATATTCAACATTATTAGCAAACACATTAAAACTGAGATTCCATCTCACCATCATCAGAGTGGCTCTTAACAAGGGTGCAGAGTGAAAGGAAGGAAACCTTATTTACTGCTAATGAGAATGTAAAGTCATGTTGCCACAATGGAAGTTAGTGCACATAAGAACCACATTAACCCAGCTGTGCTCTTTTGTCCAATGGACCCTTAAGACAACATATAACCAGAGATAGTTGCGGTCTATGTTGTTGCTGAACTGTTCGTCCTAGTTAAGAAATAAAACCTAGCTGTTCCTGAACTGGTGAATAAAAAAAAAATGTGATGTATATGGGCAATGGAATTTTATCAAGCCATGAAGAAATATGAAATCAGAGCTGCAGAGATGACTTACTGTTCTTTAAGAGGACCTGTATTTAATTCACAGCACCTAAGCCTGGTGGCTCACAACTGCCTGTGTGAGCCTCCTGAGTTTCAGGAGCTCAGACATCCTCATCTAGTCTACATGACACCTATACTCAACAGGTACATACCCACATACTGCCACACATATAAATAAAAAATATTTTAAAATTAAAATGAAATTATAGTATTTTACTGGAAAATGGATGGAACTAGAAATCATTATCAAATTATCCAGTCTCAAAAAAGATCGTTTCTCATAAACATATTCTAGATTTAAATTTGTGTATGTGTGGGTCATAAAAGGAGATAAAGGATCTTAAGTGGAAGAGGAAGAGTTGGTGAAATTTATTTACATAAAAGCAGAAAGAGATAGATACCCTTGAGAAAGAGGACCAGTAACAACTGGGGATTGGGAACAACAGTGGGAGGAATCAGTAAGAATAGTTACTGTATGCATACATAAGCCATAATGTCCACTATTTCAGGAAGACAATGTACAAAGTAGTACAAGGGCAAAGATTCCAAAACTGGCTCTGTGCAATAAAACACTGGATGCCAGAAGAGAGCAGAGTAAGGTCTTCCAAATAGACATCCAAGTGAATACTTGAAACCTGAAATTGAGTTGAAACATTAAATAAGACTTCAGGCAAGTGAAATCACACTTACAGAATAAAAAGCTGGTTTCTAATTGGTTGTGATCATGCCCAGATCTTGGAAGGCAAAGGCAGATGGATCTCTGTGAGTTTAAGGCCAGCTTGATCTATACAGTGAGCTCTAGGCCAGCATGGGTTGCAGGGTAAGATCCTGTCTCAAAAAGGAAATAAAGAAATAATGGCTTCTCACATACCCTTTATGGTAGGTTATTTGCAGATACTTAAGCAAGACGTGCTGACATACCAAAGAGAAAGAACAAAACTAAACTCATGTTTTGAGGAAAGCATTTCAACTGTATACTAATATTGTTTCCTAAATAACTGATTGAGAATCATGGAGAAGGGTTTGAGTACTCTATCAGAAAAAGAAACGTTTAATTACTGCCCTGCTTCTAGAAAGAACCACCATTAGAGACATAATGTAACCATCTTTAGCATCTCCGCAGAGTGGACAGAAGCAGTGGTGTCCTCATACAAGAGGAACCAGAAGTTGGTCATGCTGGTGAGGTGATCTGCAGAAGAATCACAGACACTGAGATAATGACTAGACTAGGAAAGGCTGTGGTTGGGCTATGTGATTTCCAGTAGGAAAGGCAACAGCAGAAACTGGCATTTTCATCTTTTTAAAATAACAGAAAATAGCTGGGTGCATGACAGAGTTGATGTCTGTGTGTGCTAACAAAACTAGAGTTTCCATGTGAGAAAAGGTATAAAGTAGACAGACGGAACAGCCACTTGGTGGGAAGGAACTTGAAGACATAGTCTGATTATCATCTGCACAGCTCATCTGATCTCAAACTGTATGTCAGCCTACTGTAGCAGCAGTCCAGGAGCTGACGAGTGGTCTGTCTGTTCTGTTGTCTCCTGCAG
Seq C2 exon
AGTGACGGCGTGCAGCAAACCACCTACCTCGCCCAGCAGTATTGCCACAAGGCAGTGCGAGAGATCCGGAAGCTTCGACCTTCTACAGAAAGGGACGCCCTCATTCAGCTTTCAGAAAGTGTGCTCACAAGAGATAAATGACAATTCTTTTTGTTCTTTCTGGCAGCTATTTTACCAGACTGTGCCTAATGAATTTTGTGAAACACTATTTGCTTCATGTGCAGATAACCAAAAATCATTTTAAAAAATAATTTCAACCTTATTGATGGGCAATTTTTTTATTGGCAAAGTTTTTCAGAAAACTTTTTAAATGTAATTAAACCATTGTCATCATAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048849:ENSRNOT00000071978:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(9.9=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=PD(4.2=23.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]