HsaINT0126178 @ hg38
Intron Retention
Gene
ENSG00000160447 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr9:128713499-128714121:+
Coord C1 exon
chr9:128713499-128713642
Coord A exon
chr9:128713643-128714045
Coord C2 exon
chr9:128714046-128714121
Length
403 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
3' ss Seq
CCCTGCCCCTACCCCTGCAGGTG
3' ss Score
11.68
Exon sequences
Seq C1 exon
GCCCGTGAGCTGGAGATTGGGGTACACTGGCGGGACTGGCGGCAGCTATGTGGCGTGGCCTTCCTGAGACTTGAGGACTTCCTGGACAATGCCTGTCACCAACTGTCCCTCAGCCTGGTACCGCAGGGACTGCTTTTTGCCCAG
Seq A exon
GTGCTCACCACCTCCGCCCTCTGACTTGGTGGGACCCTGGGGCGTCAGGGCCAGGAAGGCCTTCAAGACCGATGCACTGCGTGTAGGTGCAGAGACTGACGACCAGAGAGGAGGGCTCCAGGAATAAGGGCTCCTAGCCGCTCTCTCAGGGCTGCATCTGGAGGCCTGGGTCCTTGTCCTGACTGCCCTGCCTCAGGTGTGACCCTGGAAAAGTGCCTCTCCTCCCTGGGCCTCTGTTTCTCCACTAGTATCAATGAGGACATTGAATCTGTTTCTCTGGGTCTTTCTGGCTCTTGCATCTGTTGACCCTGGGGGCTTGGGCTGTAATCCCAGGGGCAGAGGAGGTGCCATGGCAGATGAGATGGGAGGCGACTGGTCCACAACCCTGCCCCTACCCCTGCAG
Seq C2 exon
GTGACCTTCTGCGATCCTGTCATTGAGAGGCGGCCCCGGCTGCAGAGGCAGGAACGCATCTTCTCTAAACGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160447:ENST00000291906:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGAGATTGGGGTACA
R:
TCTGCGTTTAGAGAAGATGCGT
Band lengths:
214-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development