RnoINT0133712 @ rn6
Intron Retention
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8648458-8650356:+
Coord C1 exon
chr3:8648458-8648567
Coord A exon
chr3:8648568-8650280
Coord C2 exon
chr3:8650281-8650356
Length
1713 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGG
5' ss Score
6.93
3' ss Seq
CTCTGTCCCTGTCCCCTTAGGTG
3' ss Score
12.48
Exon sequences
Seq C1 exon
GTGAAGTACTGGCTGTGTTGAAGGTTGACAATCGTGTTGTGGGCCAGACAGGATGGGGACTGGTGGCTGAGAAATCCTGGGACCAGGCTTTTAGCATCTCCTTGGACCGA
Seq A exon
GTAAGGCTGGCCTTTGTGGGGTTAGGGTTAGCTGGGGGTACAGGGACAAGGGACACTCAGGTGAGAGCTGACACCAAACCCCATTCCTCAGCCTGGTCTTTTCCACATAGGCTCGTGAGCTGGAGATCGGGGTTCACTGGCGGGACTGGCGACAGTTGTGTGGTGTGGCATTCCTGAAGCTTGAGGAATTCCTTGACAATGCCTGTCACCAGCTTTCTCTCAGTCTGGTGCCGCAGGGACGGCTCTTTGCCCAGGTTTCTACTGACCCCTGACCTCTGATATGAGGTCTTTACAACTGACATTTTGGGTTGGGGTGATGGTTCGGTGGGTAAAGTGTGTTTACTGTGGCCAGCATCTGGGTAAAAACCATGTATGGGATCGTGTGTCTGTAACTTCACGGCATGGATTCCTTAGACCCGCTGGCCAGCCAGTTTGAAACGGTGAGTTCCAGGCTTAGTGAGAAATCCTGTCTCAGAAAATAAGGTAGAAGGGCAGAAACCACCCAGTGTAGTGTCAATATTGCCTACATTGGTGAGCACACACACGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTATCTGTGTGTGTGTCTGTGTGTGTGTGTATCTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTCTGTGTGTGTGTATCTGTGTGTGTGTCTATGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTATGTCTGTGTGTGTCTGTGTGTCTGTGTCTATGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTGTCTCTGTGTATGTGTCTGTGTGTGTGTGTATCTGTGTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGCGTCTGTGTCTGTGTGTGATAAAAACTGGTAACCAATGTAATGTGGGACTTGAGGGATGGAGACAGATCCACAAACAGGCCCACAGGGAGGCTCACATCTCTACCCTGAGTTTGTCCTGCCTCTTACGTCATCTTGAATACGTAAGTGTGTCTCCTCTGAGCCTCAGTTTCTCCATTGGCACCAATGAGGATGCGGCATCATCTGGGTCCTCTGAGTTCTGCTTCATACTAGCTTCACCTCACCGTTACGATAAAACACCAGTGGAGGCAACCAAAGGCAGGGAAGGGGTCATTTCAACTTACAGATTTACACCCTGCCCCTCACCCCACCCCACCCTCTTTTCTGAGGCAGGGGTTCTCTGTGTAGCCCTGGCTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTTAAACGCAGAGATCCACCTGCCTCTGCCTCCCATATGCTGGGATAAATGTTGTGCTACACCATTGTCCAGTTGACAATCTATCTCGAAGGGAGTGGTGGCAGAAATTTAATAAGTCGGAACTCAAAGCAGAAACCATGGAGGAACCCTGTTGGCTGGCTTGCTCTCTGCCTCCCTCACAACTTAGCTTGGCTAGCTTTCTTATATAGCCCAGTACCGTCTGCGTAGGGATGGTGCCACCCACAGTGTGCTAGACCCTCCTCCATCAGTTAACAGTCAAGACAGTCTCCCCTGAGACACACCCACAAACCCTGTAATCCAGACAGCCCCTCTCAGATGCGTATGGAAAGTTAATGCTAACTAGGACACCTCCATGGTCGGGATTGGGATCAGGTGGGTCAGCCTGAGGAGTGAAAGGCAGCCAGCCTCCAGGTCTTAAGCTCTGTCCCTGTCCCCTTAG
Seq C2 exon
GTGACCTTCTGTGAGCCTGTCATTGAAAGGAGGCCGCGGCTGCAGAGACAGAGACGCGTTTTCTCTAAGCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892:ENSRNOT00000050528:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTACTGGCTGTGTTGAAGGT
R:
CTCCGCTTAGAGAAAACGCGT
Band lengths:
182-1895
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]