HsaINT0126463 @ hg38
Intron Retention
Gene
ENSG00000153246 | PLA2R1
Description
phospholipase A2 receptor 1 [Source:HGNC Symbol;Acc:HGNC:9042]
Coordinates
chr2:160032959-160042198:-
Coord C1 exon
chr2:160042025-160042198
Coord A exon
chr2:160033133-160042024
Coord C2 exon
chr2:160032959-160033132
Length
8892 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
3' ss Seq
TTAATGGCCATTGTTTCCAGCCT
3' ss Score
4.16
Exon sequences
Seq C1 exon
ATTTGCATACAATCAAAGGGAACACCCACGGGATGCCGTGTATGTTTCCCTTCCAGTATAACCATCAGTGGCATCATGAATGTACCCGTGAAGGTCGGGAAGATGACTTACTGTGGTGTGCCACGACAAGCCGTTATGAAAGAGATGAAAAGTGGGGATTTTGCCCTGATCCCA
Seq A exon
GTAAGAATAAATTTTGTCTTCTCTATATGTCATGAATGAATCAAAGATGATTAGAAAGTTATCTGTATCTAAACAAAAGCACTGGGATTGATATATTGAAGTCTGAATAAGAACCCTGATGCTATTAACACAGATTTTGATTTGGGGTTTGTTTTTGCCTTGAAAAGACAATTCTAATATATATTCTTTTTGCCGTACATTCAAGAGATGTTAATTAGCCATTCTTCATTAAGCTCAGTGCATAATGATGTTTTAACCAGAATCAAATTATAAATACTCTGCGATCTCATTGATCCCAGCTTCTTGGCTGGATACTTCAAAACAAACCTGATTGCATATAAAGCCCAGTTAGCCTTTCAATCCACTATCTCTTATGAGCTGCTTTAATTTCTCCACATCCAGGCTGCTGCTTGTCTCGCCCATTGTCAAGCCCAGGCACCAGCTGGCCCCTTGATGATCTTTCTAAAATCGCAATTGCCCTCATTATTTCTTGACAGTGGATTCTCGTCTTGACTCCCTTTCCTACTATTTACCTTCTGGCTATAACCTCATTTTTTTTCTTTTCTTAACTTGATTTTCAAAGTTCAATGGCAGTGGCAATGTTCTAACTTCTTTTTTTCAGTTAGTGCCTTATTATTTCATTTTATTTTTATTTAGCTAAAAAGTTTCCAATTGTTACCAAGTATTAGAGAATGTTTATATATGCCTCCTACTTTCTATATTCAATTTCCTTTCCCTTGGTTTCTGTGAGTCAGAGTACAGCTTTTACAGTCTTCATCTCCCATGCCTGCCTCCCCTCCACATATATAAAATGCAACAAATAAATTTGAAGCAAAAGCAAGTTGAAGAGATTAACCCCAAAGAATCTGACTTATAAAGTATCTGTAGAATTGTTTTCTAATCCAAGAGCTAGTATGGCTTAGCAAATAAGAAAGAGTATAAGCTTTGAAATAATCACACAGGCCAAGATTGGAGTCCTGCTTCCTCCCAACAATGAAATTTTGGGAAGCTCTCTCCATCTATCTGAGTCTCAGTTTCCTCAGACATAAAATGTAGGTAATAGCAGTACCTATTAGGATTATTGTGCAATTCAATTAGATGAGGCATTCAAGGCACTTTTCATAATATCTGGCACACAGTAAGTACTCACAAGGGTTAACCATTGCAGCCAGAAGCAGCAGCAACAATAGCAGCAGCAGCATCAAACCCAATTTATATTTTCAGCATACACTTCTGAATCCATGATTTCTCCTCTCTGCTGTAAGTCAACAAGCACTAAGCTATGCATAGTGGTGAATGCCAAGAGTTTTAGGACTTAGGATCCTCCCTTTAAGGAACTTGGCATCTAGAGAGAAGACAGGTTTGCTGTATGCCAGAAAATGCAGGCTGTATTTGACACAATGCCCTAGAATCACCTGGGAGATAGTTTAAATGCATATCCTGGCCCATCTTCCAGAGATGCAGTGGGTGCAGTATGTAAAACTCAACCATCTGCATTTTTGAAAAGTGCCCCAGGTGACCCCGGTGCAGATAATTCATCATCAAGCAATAATATGGAGATAATTCTATGCAATATACATCTATATACAGGGATAATATCAACACATTTAACAGCCAATATGGTATGGGCTATTGGTCAATCGCAATGGAGACCTTAGTGTGGGGGTTGGGAATTCCAGAGGCTCTCTGCTGATATTAACCCCTTAGCTGCTACAATGTGGGGGTGGGGTGCAGGGAAGCCTGGGTAGTGGGGGTAATAGAGAAGCTCAGAACAGTGGCTATTCACCAACCAGAATGAAAGCATTTTATTATTTTATAACTGTCAGATCACCAGCCTTCTCTATTTGAATCTAAATGTATGCATGTAGGTGTGTATGCATGTGATCTCTACACCCCTTGACTCCTGAAACAGATGTCATATTATTTTTATTATTGTCATATTATTTGCATCATCTCTTCTTTTTCCTTTTCCATCCCCAATAGAGGTCATTATTAAAACCAAATAAATGAACCAATACTAATAAAGTTAACACGTACTTCACATGGCTCTAATACTAGGGACTTCAAAAAAAAAACTACAATATTCTTCTTAAGGTTCTGAAACCTTAAGAAGTTTCCACTGGGAAACTTCCAATGACAGTTTCCCAGTGGAAGCCTGGGTTCAGTGGTGCTCCAGGCTTTTCATTCCCCAGACCATCTATTTGTTCAGCCTTGTACAGCTCAGAAGCTTCCTCTGCTTGACAGCCTGCCAGATTCCAGCCCTCCTGCCCTTTACCACAACCAGCAGAGAGCATGTTTATTTGTTCAGTGCCAGTTTTCTTCCTTTCTTGTTACTTTTGGCTCCCGGTAGCCAATATAACTCAAAATGACGTGTCGGAGATTGAAACCTGAGCAAGCTGATAGCTCTTTCCATGGGGTCAACAAGTGGATAGGACAGAGAAGAGTGAGTGGAATAAAGTAAAGGTCTGTACTGCTGTATCTCATCCTTCTTATGTGGGAAATTTTTTTAAATATCTCAATGTAAAATGATGCTACATTTAAAAAAAAAGTTGATTGTAAATGAGCAAAATTTAAATGTAGTATTCATAAACACATATACAAATATACTAGCGGTGAAGGATGTAATAAAACATCTTCAGCAAAAAGGATGACACACAGGAATCTCTCTGGGTTTGTTTAGAGGCAATTATGGGCCATTCTGGACTCTCTTGGTTGTGTGCCTTACAGAGCTGCAGAATCACACTTAGTTAATTTGAGATATTTTTACGATACCAACCTGTGAAATGATATGATTGCCCTTGAACCTTATTTTTATATAATTCTGATCAGTTGCTCGAGTGATATAATAAAGCAGATTTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAAGCGGGCAGATCACTTGAGGTCAGGAGTTTGAGATCAGCATGGCCAACATGGTGAAATCCCATCTCTACTAAAAATACAAAATTAGCTGGGTGTGGTGGTAGGCACCTGTAATCCCAGCTACTTAGGAGGCTAAGGCAGAAGAATCGCTTGAACCCAGGAGATGGAGGTTGCAGTGAGCCAAGATCGCGCCACTGCACTACAGCCTGGTGACAGAGCAAGACTCTGTCGCCGCCCGCCTGCCCCCGCTCCCGCCCTCCACAAAAAAGACAAACAAGCAGATTGATACAACAAAGGTATGGCTGCTCTCTCCTGAGCCCTCAACATGGCTCAGCAATGCTATATGTTTCTGTCATGCAGTTCTCACACCCCACAATGACCCTGCCAACCTCTCTATTCTCCTCTAACTTCTAACCCTACCTTCCAATCTCCTTTCTGATTCTCATTATTTGACCTCAGTTCCTACCTCATAATGGCAAAAAGATCCATCAGACAGACAGTTTGGCAACTTCCTGCTCTCTCACCTTTAAGCCTACCTGCATCTGTGCCCATCTTTATTTCCTCCCTTCTATGCGCGAGGATGATGTTCCTCCTCCTACATGGGCCAAGTCTCCCCACCTGGGCTCTGGAGCGCCCCATCCAACCTTCTCCAACCTGTATCTCAGTTGTTCTCAATGTGTGGTCCCCGTTCCAGCAGCGTTGGAATTCCCTGGGAGCTTGCTAGAAACGCAAAGTAGCAGTCACACCCTAGACCATCATATCAGAAATTCTAGAAGTGCAGCCCAGCAATCTGTGTTTTAACAAACTTCTAGGTGATTCCAGTGCACACCCCTGGGTGCTTCTTTGCTGGGCCCTTTTCCTTAGCAGTTAGACCTGTGCGAGTCTTGAAATAACATCTTAAAAATACTGCAATTCTTTCATCCCTATTTCTGCCTCCTGAAAACACCTCTCTCTCTCATCCTCTAAATAGAGAGAATTCGCAAAAGAATTGTCTATACCTTCTTCAGGGCACTGTCTCCTCTTGACTTCTACAACAATGCATGCCTGACCTTGACCTCCATTTCCACAGACCATTCATCCATTTATTCATTTAACAAATATGTATTGAACACCTACTATGTGCCAGGGACTTCTCTGGCTCCTGGGGTTATAACCGTGAATGTGAAATGTGAAAGTCATAGTGCCTGCCCTGATGAAATTCACATTCAAGTATAATACCCAAATTAATACATAATTACAGTTTGTCATAAGTTCTACCTTAAGAAAATACAGTATTACAAGTGAGAAACCGAAGTTAAAATTGGGAGTCATGGAAGGTTTTCCTGAGGAAGTTGTATTTGAACTGTAGCCCAAGAGATGAGTAGAAGTTGTCAAAATGGAAAGTGGGGAAATGAGATATTCACACGGAGATGCATGATACAGACATGTGCAAAGGAAGGGGAGAGGGAGTGGTCAGCATGGGATGCAGGCAATAAAGAGGGTATATGGTTTAAATAGAACTAAAAAATAATAATAAAACCAAGTAAAAGACAGCATGCTTTTGAGTCACCAGGCACATGCTCTAACCATTCCAAACAATGTCAGTGATAAAATACGCCCACCTGTCCAGGCTGACTGCTCCTCCACCCCCAGCCCTCAGCATGTCACTGGCCAGATATCTGAAGGTTTTGAGGGGGGAAAGAGGTTATTGCCATCTAAGAAAGACAATGTGGCAAGAGTACAGTGAATGAAGAAGAGAGAAACAAGACACTCTGAAAGGGCAGACAGAGTCCATGAGTGTCATAAAGGTAAGGACTTACCTAATTCTAAGTGCAAAAGAAAGCTATCAAAAGAGTTTTAAGCAGGGGAGTGATGATTTTAAAAATATATATTTAAGGATTACTCTGGCTCTATTATACTGAATGGCTTGGAAGGGAGCAATAGGCAAATCCTGGAGACCAGGTAGAAGGCTAGAGCAATAGTCTGGGCCAGGAGTAGTGGTGGCTTCAGTTAGGTGGCAGCAAGGGGATTGGAAAAATGTGGATTTATTGAAGATCTAACTTGTAGATAAACTGAACAGGACCTGGTTGTCAGGAGCTTAGCTGGGCTGGAGACAGCAGAGCTGTCAGGTGTTGGAGTAGCTGATTAAAGCAACAAGCCAAAAATGAAGGTGTTAAGCTGTTGATCACTCACTACAATGGTATAACAAAGAGACTAAAAGAAGAATTCGCCACCTCCCCCGTTCCATTTTTCCCCAGGGAACAGCACAGCCATCGAGGGTCAGTGGATCAGCACAGATGTGGAGTTCAGCTCAGCTCACTATTGAGAGAACACTAAACAACAACAAAGGCTTTTCAGTTGTATAGATTCTGGGTTGGGGTAAGGTGAGGGGAAGAGCTAGGAGTTGAAAAGTACTGAGCACTGAGTCAGGGTGGGGAAAAAGTGTCTTCAAGATTCCCCTCCTTCCCACTCCATCCCAGCCTCAGCAGAGGCACCTGAAGAGGACCTTGGCCCAAGGCCTCACATAGAAAGAGACCTAGGAATGGAAGGCACCTGCACCAGAAATGCAAATAACACAGAGCACGATGGGCTTGAGGGGCCTGAACCGTTAACTATGACTCTCTTTAGAAACTGCAGTGTGCCAGCTCAGCACCAAGTCTGGGGTAGGGGCAGCTTTCCCCCATGAGGCCTACCAGGTAAAGCCTTTGTAACTGCCTGTGGTCAGACCTCAAGAATCACATATAGGTTTTTAACCAGGAGTAGGACTTCTCACTCCTAAGAACTTGGAGGCTAGGAGAAAAAGTGAGACATTAATTCAGACTCCATGTTTCTGACATGCATAGCTAAGTTTATGGAGATATACATTTGGAAAAGAAAATTAAATACTATTCAGGTTTGCACATGTTACATGTGAGTCAGTTATGTAGAGATGTGGACTAGGTAGGTAGATGTAATGGTCTCTATGTATTTGGAAGTTATAGGAAATGGACCCATGAGAACAGGTTAGATAGCCATGTGTAGAAAGAATGTATAGAATAGAAAGGAAGGGGGCTCAGGGCCAAGTCTTAAGGCCTCCAACATTTAATTTGAGTAGAGAAGAATAAATCAGCAAGGGAGACTGAAAGGGGGCAGCCAGGGAGGAATAAGGGTAGCCAGGCATGGGAAGTCAAGAAAAGAGAGTAAATCAGCACGGAGAGGGAACTCAGCCTGCCAAGTGCTGATGAAGGGGCTTGTTTGATAAAGTCTCAAACTAACAGTTGCTGAATTTGGCAACACAGGGGTCATTGATGGCCTTAAACAAGGTATACATTAATGGCTAGATTCAGTGGATGAGACTAAGTGGGAAATTAGAAGAGGATGAAACACTTCCCAAGTCATTCTACGTATGCACTTCACTTCATTAAAAAGGAGGTGTAGTTTAGGAAGGAAAAATCACCTATTTATAACACCATGAAAAAGATTCTGGTAATCTCTCATCACATAATAGGAGACTCAAAGTTATATATGACACAATTGCTTCCCTGGAGCCCATAATTTAGCAATAGAAGAGATGATATAAACACAATCAAAGATGTAAAGAATATAACAATAGGATTTTAGCCCTTAGATTAGAATTTTTCAAGAATAATAAACATACCTGAGACACCAGCCTTTGATTTTCAGAGTTCTCAAGCTGGGGTGACCCTTCAGAGTTGCCCCTTGTTGGGATACAGGGGCTAAGTATACCACTACATTGACCAGTCATGGTGTCAGCTGCCCTTGGGAAGGGAGAGTGAAAGGGCAAAGAGACTCTTCTGCCAAAGCAGTCCTTAGAGAGCAGCACATCACAGTGTCTATGACAACATTTTCATTCCATTTGTTACTTAAAACTTACAAATGAGATTCCTGGAGGGACATGCAGCCTATCCTAGAGAAGCAGAGAAAGGACTTGTGTCTGCCAGTACAGAAGTACAAATTCTTATACAGGCTGAGTATCGCTTATCCAAAATTCTTGGGCCCAAAAGTGTTTTAGATTTCTGATTTTAGGATATTTGCATATACATAATAAGGTTTCTTGGGCACAGGACCCAAGTGTAAACACAGACTTCATTTATGTTTCATATATACATTATACCCATAGCCTGAAGGTAATTTTATACAATATTTAAAATAATTTTGTGCATGAAACAAAGTATTGACCAAAACCCATCACGAGGTCAGGTGTCGAATTTTCTACTTGTGGCGTCATGTCAGCACTAAAAAAATTTTCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAATCCACCCGCCTCAGCTTCCCAAAGGGCTGGGATTACAGGCATGAGACACCATACCCGGCATCTTTCTTTCTCTTTTTGTAGTGATAGGGTCTTGCTTTGTTGACCAGGCTGGTCTCGAACTCCTGACTTCAAGTGATCCTCCCGCTTCAGCCTCCCAAAGTGCTAGAATTACAGGCATGAGCCACTGTGACTGTCCTAAATGATTCTTATGCATGCCAAAACTATGAACACACCCCCGCTCCCCCATCATGGTCTCAGCTGTCATGGTGGATGAGTATGGCTGAACTAGTGTCTCGTAACACGTAGTAGTATATTGTCCTTCTCAGGGAAGGCCTAGGATTTTAACTGAAAACAATCTTTAAGGATTCCATCTCAATGGGGAAATTTCAGCCACCTGGGCAAAATGGTTACTGAAAATTTCCCTTCTCTTTTTCCTTTCTTTCTTTTCCTTCCCTTCAGTGTTACTTGGTGATAGCCTTGTCTTCTGCCTTCCTTTAATCTTGGATCCTTCTATAAACACATGTATCAGTCAGGAAACTCTATAGACAACCTTAGATTTATATGTGATTTAAAACCTCTGGAATGTGTGTTGCAACCAGACATGAAAATAAACTTTCCACATTTCCCAAGGGGACCATCTAACTGTTATGAGGGAGGAAAAAAAACCAAACAAAAAAGATTTTATTGTCAAATAAGTTTGAAGTACACTAAATTAACAGTAAGCATGTTTCTTTACTACAGAACTTCTCAGAGCCTTGAATATGCTAATGTTCATTGTGAATTTCCCAGAGAACGCTATGTATGCATTGTGTCCAGATTTTCTTGGGGAGCCTCTTAAAGTTGTCTTACTTTGGGAATCACACTTTGGGAAAGGCCATCCTAGACTTCAGCTGGTTGCCTGTCAGTCATTTTCAGTCATGCTGCAGTATGGCTCACATTCTCTGTATTCTGACATTCTCTGTCTGAGTTTGGTTTCCGGTCATTATTGTGGCTACTTAGTTCACCTTGGAGTTTGATTTTAAATGTTAGCAAAAGCACCCAAACTCAGTCTTAATTTTCTGTTATTTCAAAAAAAACTTCAGACTTCAGCTCCACATTTCATACTTTATTACATTTCCTTTTGAGCACACTATGCAATCTTCGGCCAGTGTCTTACAAGTGGATCTTGCTTCTATTCCTCTTGGCTGAAAGAACTTTCTTAAACTATATGTCAGTGTTCCTGTGCTTGATGTTTATTTGAAAACTTGTGTTTACTATTGACTCATATTCCTACTGTATCCTTTTATTTTAGCATTTTGTATTTAGGGAGAAATGCCTTTGAAATAACATTTGTATCTACTAAAATGAACATTTAAAGTTACAAGTTTTCAATATAAAGTTCTAAATGACAAAAGAACTTAGATCTTATTTTCACAAATACTTCGCTTCTACTTCCTTCTCTTAAAACTGGTTCCTATTATTACTCTGGAAAGGATCATAGCTTCTTCATTGGTGATTTCTTATATTTCTTTAGGTAAATCATGAAAGAGTTTAACCATATCTTAGCAATGGAATAACAATGCAGATTTTATCATAAAGACCTAATCAAGAATAGATAAGGCCCTGAAGTTTTAGAGATTGCAAGATGGAATAATTCCATTCAGACTTACCTTAGAAATATGTTGCTGTATAGATAAAATAAGACCTGGTTGTTTTTAATGGCCATTGTTTCCAG
Seq C2 exon
CCTCTGCAGAAGTAGGTTGTGATACTATTTGGGAGAAGGACCTCAATTCACACATTTGCTACCAGTTCAACCTGCTTTCATCTCTCTCTTGGAGTGAGGCACATTCTTCATGCCAGATGCAAGGAGGTACGCTGTTAAGTATTACAGATGAAACTGAAGAAAATTTCATAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153246:ENST00000283243:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=WD(100=71.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(29.6=54.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development