HsaINT0128793 @ hg38
Intron Retention
Gene
ENSG00000143442 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr1:151440928-151442205:-
Coord C1 exon
chr1:151442081-151442205
Coord A exon
chr1:151441087-151442080
Coord C2 exon
chr1:151440928-151441086
Length
994 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
ATGCCTCCCCTTCCCCACAGTTT
3' ss Score
11
Exon sequences
Seq C1 exon
CATGGCGGACACCGACCTGTTCATGGAATGTGAGGAGGAGGAGTTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTATAATTCAGTGGATAAAACTACCACAG
Seq A exon
GTAACAAAAGCTCTTCTGATCTTAGATGGTTTAAATTAATTAAATTGAATGGTATTTTGGTTAACAAAGTGTGAGATGGAAAAGGACTTGAAGAATCCAGGGAGACCTCGTTGTGGCACTCACTGGTGCTGCCTTTTTTCCCATGCTCTAGTCTGTGAAAACCTCAGTTTCCTCATCCATATAGCTAGAAACTATATATTTAATTCATCGAAAACATTGGAAGGTTGGATTAACCAGTGTTTATCAAATATCTAGCAGTCTTCTTACTAAAAGATGTATGAACAAGAATTCAAAGTGGTGGTGTGTGTGTGTCAGTGCTCATTTATGTACCCAGTCAAAAATAGGTTCCCATAGTCTTGTTTTTTTTGTTTTATTTTGTTTTACTTGAACTTGGTTTCCTTTGTGAGTGGAGTAGAAATTGCCTTGTGTCTGCCTTCATGGACAGTTTACAAATTTAGGCTTGTTAGCTTTTCTTTCATAAAGGTGATACTGCTGGGTCAAATTCTAGATTGCCCTGAATTCAGAAAATGGGTGGTAGTTCTTTTGCTCCCCTAAATTGTACCAGTTGCTCTATATTTTTATCTTTCCTGTCTTGAGACCTGAAGATGGCATTGGTTTGGGCTGAAATAGGGCACAGTTCAGGGTCTTTTGGATGGCTTAATATGCATGATTATGAATACCACTAGTGGTAATAATAAACCTTTGAGTCCTAGAGGTTTGCTAGTGCTATGTAAGCAAAGATTAAAATCCCAGTTCAGTGGGCTCCGTGATGTAACTTAATTAACCAGGAGATGTGAGACGAAGAAGGGATTGTGTTTAAATGGTGGACTAAGGGTTAAGTAGGAGGAGAAATCACATGAACAGTTGGATTTATGAAACAGGAAACTTTTTGGCTATAGAGACCCACAATAAGATGGAAAGGGAAGATTAGAGCAGTATCCTTTAGTGTCATCTGTCCCTGTCTCCAAGTGACTATGCCTCCCCTTCCCCACAG
Seq C2 exon
TTTCTGTGAGCCAGCAGCCAGTCTCGGCTCCAGTGCCCATCGCTGCCCATGCTTCTGTTGCTGGGCACCTCTCTACATCCACCACCGTTAGTAGCAGCGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAATTGCCAACAACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143442:ENST00000271715:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=0.746
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCGACCTGTTCATGGA
R:
CATTGTTGTTGGCAATTAGTGTGACA
Band lengths:
278-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development