HsaINT0133009 @ hg19
Intron Retention
Gene
ENSG00000178055 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:30716]
Coordinates
chr3:46871894-46873526:-
Coord C1 exon
chr3:46873366-46873526
Coord A exon
chr3:46871984-46873365
Coord C2 exon
chr3:46871894-46871983
Length
1382 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
3' ss Seq
GTTTCTTTCTCTTTCTCTAGGGA
3' ss Score
12.28
Exon sequences
Seq C1 exon
GAGAGAAACTTGCATCAGAAATTCTTCAGGATGTGGACCAATACATCATGTGCTATGAGGAATGTAATAAGATAATACAGAAGGCCTTGTCATCTACTAAGGATGTAATAATAAAAGGGATGGTCTGTGGCTATAAAGAACAAGGAAAGGATTCTTGTCAA
Seq A exon
GTAAATTCATGGATCCTTTCCCCATTCTCAGATGGCAGAGTCTGGGTTATTTGCTGCTTCCTCTATTCACACCTAGTTGAGTTAAAGAGATTCATAGAGGGAAACCTGCCATGGCTGCCCTAACTTGGCCTGGTCTGTTCTTTCAAAAGGGAGATTGCACTGCCTGGGGGCACTGCTGGCATGTGGGAAAGTTGGGGTGGGTAATGCTAATAACATATGCTGTACTAATTGAGGTTCTCCTATGTGACGCTCACCATGCCAGTGTGGACATTAACCCTCATTATCTCAGTTAAACCACACCACAACCCCGCAACATAAACATCACACCCCTTGGATGAATGTGAAAGGTGATATCCAAGGACATTACTTCAGGATCCTCCTGTGAGTACCAACTCCCAGACCCATGCTCTTCCCTCGGCACCAAGCTGCCTTCCTGAGGAGGAGGCATTAGAGCTGGGTCTTAGAGAATGAGTATTTGGATTTCTTGGAAAGAGGAAAACAGCATTGTAAGAAGAGGGAATAGCATGTACAGTGGCTCAGAGGTCTGAGGGAACTTCTCATGTTAAGGGACACTTTACACATTTGGAGAAATGAGGCAGCAAATGTGGCTGAGAAGTGGGTTGGAGTCAGAATGTGTATGGCTTGGAGTGCGGTGCCAAGTTTCTAGATTTTGCTCTGGCAGGACTTGGGAGGGAGGCTTGGTGAGCATAATTAGATTTGCCTTTTAGATAAATGACTCCCTGAGCTGTGTGGTGCATAGATAGAAGTCTAAATGCTTGTTTTCATCACCTAGGCTGTGATAAATGGAGTCCTGAGCAGTGCCTGGGGCAGGGAGGCCGGTGAAGGTGTTTTTGAGTTTGACCCATTCATTCTTGTTGACTGACTGCATGTAGGGGTGGGGGTGAGGGAGAGGTTCAGGAGGACCCTGTTTTTCTGACTGAGATGATTGGTCAGCAGAGGAGGTTTGGGAAAGGACACGCAGAATTCTGCTTGAGTTGGAGGGTGTGGGGCTGTCTGAGAGTGGAACTGAAAATATGGAGGGAGCTGGCTATGTAGGTTAGGAGTTGTAGAGAAACTTCAGGCTAAATATGAGGATTTAGTGGGCTGCCATGCAGAGGTTCAAGACGTTTAACAGCCACTATAGTTTGGAAAATGAGAAGCCATCATTTTCTCAGAGCATATTAAAGTTTTCCCATTAACTTTTTAGTTCCCATGCTCACATATTCAGTTGTCATATTCACAGAAATCTGGGTGGTGGGGCCTTTGAGGTGCCAGAGGAAGCCCTATGTGTGCCTGTCTCCTCAACACCTTGTAGTACAGTCAGTCTGCTCTGATATAGATCCTATTCAATTTCTGAAGTTCGTTTCTTTCTCTTTCTCTAG
Seq C2 exon
GGAGATTCTGGGGGCCGCTTGGCCTGTGAATATAATGACACATGGGTCCAGGTAGGGATTGTGAGCTGGGGCATCGGCTGTGGTCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055-PRSS42:NM_182702:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(13.1=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGCATCAGAAATTCTTCAGGA
R:
TCAGCGACCACAGCCGAT
Band lengths:
246-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)