BtaINT0118763 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031454 | PRSS42
Description
protease, serine, 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr22:53238769-53240657:+
Coord C1 exon
chr22:53238769-53238926
Coord A exon
chr22:53238927-53240423
Coord C2 exon
chr22:53240424-53240657
Length
1497 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATTTCTTTCTCTTTTTCAGGGA
3' ss Score
12.22
Exon sequences
Seq C1 exon
GCCCACTTGTGTCTGAAGTTCTCCAGGAGATCGACCAGTATATCATGTACTATGAAAAATGTAATGGGCTGCTCCAGATGGCCCTACGAACAGATAAGGATTTAGTACAAGAAGGAGTGATCTGCGGCTATAATAGTATAGGAAAAGATTCTTGTCAG
Seq A exon
GTAAGTTCATGGGTCCCTTGCCACGTCTGTATCCTTCTTCCCCAGTGACAGGGCCTGGGTTATTTCCCACCTTATCTTTCAGTCTTTACTTAAGGAGATTCAGGGGAGAACCCCTCATGATACCCATGAGCCGGCCTGGCCTGTTTCTCCAATAGGGAGGAGCCCTACATCCTGGGGGTGCTGCCAGGATGCAGTGAAGTTGGGGGTGATGATGATAATCATGTAGTTCCTGTAATTGAGTTCTTTCTATGGGCACTTCTGTGCCAGTTTCAGCATTCACCCACATTAGCTCAGTCTCCCAGCTCACAACCCAGCCACCTAGACATTATACATCTTACTATACAGATGTGGGCCCTCCAGAGACAGAAGTTCCAGGGCCTCTGGGAGTGCCTGTAGGAGCCCTGGGCCCACAGCATCCCCTCTGCCCTGAGCAGCTTCCTGAGCGGGGGACAGGTCTCAGAGGATGAGTGTTTGGATCCTGGCAAGAGGAGAACATCACTGTGGGAGAGGGAGCAGTGAGTTCGAGGCTCAAGGTCTGAAGCACCGGTCTTGTTTAGGGAATGGGTTTCCAGTCTGGAGCAATGAGGAGGCCAGTATGGCCAGAGTAGGGGCTGGAGTCAGAACGTGTGGCCTGCAGTGCTGTGCTGCGCTTCTTGGTCCTGTCCAGGCAGGCCTGTAGGCCGGGAGTTTGTTTTCTCCATGTGGGCAATGGTGCTGAGCCCCAGGCAGGACCTGGGCTCATGGAGGGGTGGAGGGGATCTGAAGCACATTGTCATCAGTTCTTGGTAACCGATTGCATGTGAGGATGGGAGTGAGGGAGAGCTTGAAGAGGACTCTAAGTTTCTGACTGAGCTGGTTGGTGGGGGGCACCAGAGCAGTTTTGGAAAAGGATGTGCAGTGTTTGCATGAGCTGGGATGAGTATGTGGGATGTCTTGAGAGTGTAGCTTAATATATGGAGTCAGCTGGCTGTATGGTCAGGAGCTCTAGAGAAACTTAGGCTAGGTGTACGGATTAAGGGGCTCAGAGCAGAGGTCGTATTTGAAGTGTTTAACAACCACTGTAGTATAGGAGGGCTTCCCTGGTGGCTCAGTGGTAGAGAATCTGTGTGCAGTGCAGCAGCCGCAGGAGACCTGGGTTCGATCCCTGGGTTGGGAAGATCCCTTGGAGGAGAGCATGGCAACCCACCCCAGTATTCTTGCCTGGAGAGTCTCATGGACAGAGGAGCCTGGCGGGCTCGAAGAGCTGGACATGACTAAAGCAACTTAGCACACATGCACGTAGTGTAGGAAATGACCAGTCATAATGTCTTCAGAGGATACTAAAATTTTCCAGTTGACTTTTCAGTCCTCAGTTCTTACCATCACGGAAATCTGGGCCTGGGAGATGTCTGGGGAAGGCTCACAGATGCCTGTCTCTCAGTGTCTTGCTGTGCAGTCAGCCTGCCCTGATGTGGGTGCTCTTCCATTCCTGAAGTTTGATTTCTTTCTCTTTTTCAG
Seq C2 exon
GGAGATTCTGGGGGCCCTCTGGTCTGTCAGTACAGTACCACATGGGTCCAGGTAGGGATTGTGAGCTGGGGCGTTGGCTGTGGTCGTAACAATACGCCTGGAGTTTACACAGAAACTGCTCTCTACGCTAAGTGGCTAGTTGCAGTGGTGAACAAGGCTGCCTCTTTGTATCCAGTGGTGCTCCTCCTGTTGCTGTGTGTGGTGTTGCCCCTGGGCCTCCTGGTGACCCTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031454:ENSBTAT00000010816:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.5=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCCAGGAGATCGACCA
R:
CACACACAGCAACAGGAGGAG
Band lengths:
343-1840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]