MmuINT0127508 @ mm10
Intron Retention
Gene
ENSMUSG00000044664 | Prss42
Description
protease, serine 42 [Source:MGI Symbol;Acc:MGI:2665280]
Coordinates
chr9:110800811-110803754:+
Coord C1 exon
chr9:110800811-110800971
Coord A exon
chr9:110800972-110802994
Coord C2 exon
chr9:110802995-110803754
Length
2023 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GTTTCTTTCTCTTTCTTCAGGGA
3' ss Score
11.92
Exon sequences
Seq C1 exon
CACCGGATGTTCCGACAGAAATCCTCCAGGAGGTGGACCAAAATGTCATCCTTTATGAGGAATGTAATGAGATGCTGAAGAAAGCTACCTCAAGTTCTGTGGATCTCGTCAAGAGAGGCATGGTCTGTGGCTATAAAGAAAGAGGAAAGGACGCCTGCCAG
Seq A exon
GTACGTTCACAGACTCCTTTCTTAGCCCCAGATGTCAAGGCCTGAGTCATTTGCTAACTCTTTTACTCAAGAAAATTAATGGGGAGAGTCCCAACACCCCATGGCTCCAGGAGCTGGCCTCACCCTATCTTTCTGCGTAGCACAGGATAGCCTTAAACTTGAGATTGGCTTGCATCAACCTCCCACATGTTGAGATTACGGGGAGACACCACTGTGTCCAGCTGGTTTGGTCCTCTCTAAAGGACCTGTGTAGGTGGATGTGTGGGGTTCCTGTGTATGTGTTGAAGTTGGGGGTGGGTAATATAACAATGCTTTGCATCTAGTTCCCCTATGTGGCAGTTCCCACCACAAAGGGAACATGAGCTCATGTTCACTCAGTTAACTCATATCACAACCTGACAACGTAACACCATAGCTATCAGACTGCTGTGGAAGTCCAAAGACATGAACTGAAGATCCTCTTGTGATATTGTTTTTAGAGATAGGGGTGAATATGCGTAGGGGATCGGAGGTCTGAGTGGACTTCTTATGTTGTCCTAGTGTATGGTATACACTTGTAATCCCAGCACTCACGAGTTTGAAGTAGGAAGATCAAAAGCTCAAGGTCAGACCAGCCTACATAGTGAGTGTGAGGTGAGTCTTGGATATGTAGTAAGATCTGGTCTCCATTTCAGGGATGGGAAGTGAAGAGCAGTGAACAAGAGACCTTAGGCTTGTACCCCACACTAGGGTAGAGGATGCAGATGTGTTAAATACCTGGAGCAGTAAAATTGGGCTGAAGGTGGCCAAGTTTCTAGAGTGGCCCAGGCAAACATGGGAAGTGCAGCCGGGTGAACATGGTCAGATTTTCCTTTTAGATCAGTGGCTCCCTTGGATGTATAATTCCAGAATTAATGTCTTCAGAGCATGAAGAAGATGCCGTTAAGTTCTGACCAGGGTCTAGAGCAACCAAGCAGTGAGGCAAGCATGTCTGAGGTGTCTGAGGTAAAATGATCAGCTAATGAGAGGGTAGAGGTGGTAAGGGGTACTGAGAAAGCCTATGGTTGGTTGGTTTGTTTGCTTATTTTATGTGTATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGAGAATTGAACTCAGGACCTCTGGAAGAGTAATCAGTGCTCATAACTGTTGAGCCATCTCTCCAGCCCCATGGAAGCCTATGTTTTTTTTTTTTTTTCACTGAAGTGATTGTTAGGGTCTCTGAAGTAGGTTTGGGAGAAGAATATGCATAAATGGGCTCTATAATCCACCAGGATCTTGCTGTATAGGTGAGGGGAGAAATTGCATTAAATGCAAGGAGCTGCTACATAGCAATGATATTTAATGGGATAAAAAAATTTGTCTTCGTTTTATGTGTGTGAGTGGTTTGCTATCATATATTTATGTGTGCTGTGTGCATACAGTGCCTGCAGAAGCCAGAAGAGGGTGTAGGACCCCTTAGAACTGGAGTGGCAGGTGATGGTGGGTCACCATGTGGGTGTTCTCAAGTAATCCAGCGTCCTCTGCAGAAGGGCCATGTCTCCTGCCCCTCGGAAGTAGAATTCAGAATTTAACACCACCATGACTCCAGAAATGACGAAGATAACCTCAGAGCAGATTAACACTTCCCCATTAACTCTTCACTGACCATAGGAATAAACCCAGTTCCAGCATTTGTATATTAATAGAAGCTTGGGCGTGGCAAGGATGCTTCCCTGTCCCTCTCTCTTTCCGAGTCAGTGTCTTAGTACGTAGTACGGTAGGCTTGAACTCCCTGAAATCCTTCTGCCTCACCCTCACTAGGGCTGATACTATAGGCATATGCCACTGCACTTGGCTCTGGCTGGACCTTTGGGATGCCCAAGGAAACTATGAGCCTGTCCCCTGAGTGTCTTCCAGTGTAATTAGCGAAACCCACTGGGGCTCAATTCCATTCTTCATATTTGTTTCTTTCTCTTTCTTCAG
Seq C2 exon
GGAGATTCTGGAGGCCCGATGTCCTGTGAATTTGAAAACAAATGGGTGCAGGTAGGAGTTGTGAGCTGGGGCATCAGCTGTGGTCGCAAAGGATACCCTGGAGTTTATACAGACGTTGCCTTCTACAGCAAGTGGCTAATTGCCGTGGTGAACCAGGCAGATTGTTTGCATCCAGTGGTCTTCCTCGTCTTACTGCTGTGTTCGCTGACCTCATGACATCCTGTGGACACGGTGATCTCATTCCTATCCTCTTTAGAGCCCCTCTTGTTTGACCTTCCCAATGCCCTTTCTTCAAATCCCTTGCCCCAGAGAGAGCCACAGTGAAATATGTCGGGGATCTGAGAGACTTGAAAGTGTTCTGCCTGGTGCTCTGGTCACCATCCTTGGCCACAGCACTCCTGAGTTGTGCTCTGCCTGGCAGTAACGAAGGTTAGTCAGTTCCAGTTAGAAGACAAACTGGCCTGCCAGGTCAATCGCAGTGACCTCAGCAAGGATGTCATCAGGGGAGGGGCAAGTGCTAGGCATAGCTGTGGTTTCAGGGAACTCACCTCAGACTGTCACACTAGATCTAGCTTGGTGATCACACACACACACACACACACACACACACACACACACACACAGAGCGCTTATGTGTCCTAACTATAATTGTTTTCTTTATACATCTTTATCTATGACTTTGTAAAGTTACATTTCATATAGAATGTAATTTGCAACCATGTTCAAAGATAAAGTGAAACTGAAAAAATAGCTAAGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044664:ENSMUST00000035715:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.4=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types