HsaINT1028232 @ hg38
Intron Retention
Gene
ENSG00000178055 | PRSS42
Description
protease, serine 42 [Source:HGNC Symbol;Acc:HGNC:30716]
Coordinates
chr3:46830404-46832036:-
Coord C1 exon
chr3:46831876-46832036
Coord A exon
chr3:46830494-46831875
Coord C2 exon
chr3:46830404-46830493
Length
1382 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
3' ss Seq
GTTTCTTTCTCTTTCTCTAGGGA
3' ss Score
12.28
Exon sequences
Seq C1 exon
GAGAGAAACTTGCATCAGAAATTCTTCAGGATGTGGACCAATACATCATGTGCTATGAGGAATGTAATAAGATAATACAGAAGGCCTTGTCATCTACTAAGGATGTAATAATAAAAGGGATGGTCTGTGGCTATAAAGAACAAGGAAAGGATTCTTGTCAA
Seq A exon
GTAAATTCATGGATCCTTTCCCCATTCTCAGATGGCAGAGTCTGGGTTATTTGCTGCTTCCTCTATTCACACCTAGTTGAGTTAAAGAGATTCATAGAGGGAAACCTGCCATGGCTGCCCTAACTTGGCCTGGTCTGTTCTTTCAAAAGGGAGATTGCACTGCCTGGGGGCACTGCTGGCATGTGGGAAAGTTGGGGTGGGTAATGCTAATAACATATGCTGTACTAATTGAGGTTCTCCTATGTGACGCTCACCATGCCAGTGTGGACATTAACCCTCATTATCTCAGTTAAACCACACCACAACCCCGCAACATAAACATCACACCCCTTGGATGAATGTGAAAGGTGATATCCAAGGACATTACTTCAGGATCCTCCTGTGAGTACCAACTCCCAGACCCATGCTCTTCCCTCGGCACCAAGCTGCCTTCCTGAGGAGGAGGCATTAGAGCTGGGTCTTAGAGAATGAGTATTTGGATTTCTTGGAAAGAGGAAAACAGCATTGTAAGAAGAGGGAATAGCATGTACAGTGGCTCAGAGGTCTGAGGGAACTTCTCATGTTAAGGGACACTTTACACATTTGGAGAAATGAGGCAGCAAATGTGGCTGAGAAGTGGGTTGGAGTCAGAATGTGTATGGCTTGGAGTGCGGTGCCAAGTTTCTAGATTTTGCTCTGGCAGGACTTGGGAGGGAGGCTTGGTGAGCATAATTAGATTTGCCTTTTAGATAAATGACTCCCTGAGCTGTGTGGTGCATAGATAGAAGTCTAAATGCTTGTTTTCATCACCTAGGCTGTGATAAATGGAGTCCTGAGCAGTGCCTGGGGCAGGGAGGCCGGTGAAGGTGTTTTTGAGTTTGACCCATTCATTCTTGTTGACTGACTGCATGTAGGGGTGGGGGTGAGGGAGAGGTTCAGGAGGACCCTGTTTTTCTGACTGAGATGATTGGTCAGCAGAGGAGGTTTGGGAAAGGACACGCAGAATTCTGCTTGAGTTGGAGGGTGTGGGGCTGTCTGAGAGTGGAACTGAAAATATGGAGGGAGCTGGCTATGTAGGTTAGGAGTTGTAGAGAAACTTCAGGCTAAATATGAGGATTTAGTGGGCTGCCATGCAGAGGTTCAAGACGTTTAACAGCCACTATAGTTTGGAAAATGAGAAGCCATCATTTTCTCAGAGCATATTAAAGTTTTCCCATTAACTTTTTAGTTCCCATGCTCACATATTCAGTTGTCATATTCACAGAAATCTGGGTGGTGGGGCCTTTGAGGTGCCAGAGGAAGCCCTATGTGTGCCTGTCTCCTCAACACCTTGTAGTACAGTCAGTCTGCTCTGATATAGATCCTATTCAATTTCTGAAGTTCGTTTCTTTCTCTTTCTCTAG
Seq C2 exon
GGAGATTCTGGGGGCCGCTTGGCCTGTGAATATAATGACACATGGGTCCAGGTAGGGATTGTGAGCTGGGGCATCGGCTGTGGTCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178055:ENST00000429665:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(13.1=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGCATCAGAAATTCTTCAGGA
R:
TCAGCGACCACAGCCGAT
Band lengths:
246-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains