RnoINT0118769 @ rn6
Intron Retention
Gene
ENSRNOG00000031971 | Prss42
Description
serine protease 42 [Source:RGD Symbol;Acc:1562548]
Coordinates
chr8:119067719-119070630:+
Coord C1 exon
chr8:119067719-119067879
Coord A exon
chr8:119067880-119069837
Coord C2 exon
chr8:119069838-119070630
Length
1958 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTTTCTTTCTCTTTCTTCAGGGG
3' ss Score
11.57
Exon sequences
Seq C1 exon
CACCACAAATTCCGACAGAAATTCTCCAGGAGGTGGACCAAAGCATCATCCTTTATGAGGAATGTAATGAGATGTTGAAGAAAATGGCATCGACTTCTGTTGATCTTGTCAAGAGAGGCATGGTCTGTGCTTACAAAGAAGGAGGAAAGGATGCTTGCCAG
Seq A exon
GTCAGTTCGTGGCTCCTTCCTTAGCCTCAGATGTCAAGGCCTGCTTGTTTGCTAACTCTGTTACTCAAGAAAACTCACGGGGAGAGCCCCAACACCCTATGGCTCCAGGAGCTGGCCTCGCCCGATCTTTCTGTGTAGCTCAGGGTAGCCTTGAGCTTGAGATCGGCTTGCATCAAGCGTTGAGATTACAGGGAGACACCACCATGTCCAGCTGGTTTGGTCCTCTCTAAAGAACCTGCATAGGTGGATGTTTGGGGTTCCTGTTTATGTGTTGATGTTGGAGATTGGTAATATAATAATCTTTTGCATTGAGTTCCCCTATGTGGCAGTTCCCACAATGAAGGGACCATGAGCCCTTGTTAACTCAGTTTACCTATACCACAACCTGGCAGCATTAAGCCATAACTATCCGCCTGCTGTGGAAGTCCAAAGACATGAACTGAAGGTCCTCTTGTGATATCATTTTTAGAGATAGGGAACAGTATGCTCAGGGGATCAGAGATCTGAGCGCACTTCCTATGTTGTCCAAGTGTGTGGTATATACTTGTAATCCTAGCACTCAAGAGTTTGAGGTAGGAAGATCAAAAGTTCAAGGCCAGACTAGCCTACATAGGTGAGTCTTGGTTATGTAGTGAGGTCTTGTCTCCTTTCAGGAATGAGAGGTGAACAGCAATAGACAAGCAGCCCTAGGTTTGTACCCCACACTGGGGTAGAAGATACTGAGGTTTTAAATGTCTGGAGCAATAAGATGTAGGGTTGCATGTGGTTAAGTTTCTAGAGTGGCCCAGGCAGACCTGGGAAATGTGGCTGGGTGAACATGTCAGATTTTCCTTTTAATCAGTGGCTCCCTTGGATGTGTAATTCCAGAACTAATGTCTTCAGAGCACAGAGAAGATGCCATTAAGTTCTAGGGATGCTTGGGTGCGAGGGTCTAGGGCAACCAAGCAATGAGGAAAGCGTGTCTAAGGTCAAATTATCAGTTCACGTGAGGTTAGGGGTTGTAAGAGATACTGAGGAAGCCTATGGTTTGTTTGTTTAATGTGTATGAGCACACTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCCCTGGAAGAGCAGTCAGTGTTCTTAACCACTGAGCCATCTCTCCAGTCCCCTGGAAGACTATTTTTCTTCACTGAAGTGATTGCTAGGGTCTCTGAAGCAGGTTTGGGAGAAGATTATGCATAAATGGGCTCTATAATTCACAAGGATCTTGCTGTAGAGGTTAGGGGAGACCTTGCATTAAAATGCAAGGAGCTGCTACATAGCAATGATATTTAACGGGATTTTAAAAGGGGATTTGTTTTCATTTTCTGTGAGTGAATGGTTTGCCCTCATGTATTTATGTGCGCTGTGTACATGCAGTGCCTGCAAAAGCCAGAAGAGGGCATAGAGCTGGAGTGGCAGGTGATTATGGGTCACCATGTGGCTGTTCTCAACTAATCCTGCAAAAGGAGCAAGAGCCCTAAACCACCCGGAGTCATGTCTCCAGCCCCTCGGGAGTGGAATTCAGAATTTAACACCAGTGTGAGGAAGATAACTTCAGAGCATTAACATTTCCCCATTAACTCTTCAATGGCCCTATGTATACACCCATTTCCAGCTTTTGTGTATCAGCAGAGGCTTGGGTATACCACAGGTGCTTCCCCCGCCCCTCTCTCTTTCTGAGATATAGTGTCTTGGTATGCAGTCCAGCAGGCTTGAACTCCCTGAAATCCTCCTGCCTCACCCTCACTAGGGCTGATACTGCTACTGCACTTGGCTCCAAGGAGACTGTGTATGAGCCTGTCTCCTGGGTGTCTTCCATTGTAATTAGCCAGACCTAGTGGGGATCAATCCCACTCTCTCCATATGTTTCTTTCTCTTTCTTCAG
Seq C2 exon
GGGGATTCTGGAGGCCCGTTGTCCTGTGAATTTGATAACAGATGGGTGCAGATAGGAGTTGTGAGCTGGGGCATTGGCTGTGGTCGCAAAGGACACCCTGGAGTTTATACAGACGTTGCCTTCTACAACAAGTGGCTAATCACCGTGGTGAACCAGACTGCTTGTTTGCATCCAGTGGTCTTCCTCATCTTACTGCTGTGTTTGCTGACCTTGTGACATCCTGTGGACATGGTGATGGCTCATCTCATTCCCATCCTCTCTCGGAGCCCCTCTCGACTGACCTTCCCAATACCCTTTCTTCAAATCCTATTTGAGGATCCCTTGCCCCAGGGAAATAAGCAGGGGATCTGAGAGACTTCAAAGTGTTCTGCCTGGTGATCTGGTTGCCATCCTTGGCCTCAAGCCTCCTGAGCTGTGCTCTGCCTGGCAGTAATGAAGGTTAGTCAGTTCCAGTTGGAAGGCAAACTGGCCTGCCAGTTAAATGACAGTGACCTGGGCAAGGATATCATCAGGGGTGGGGCAAGTGCTAGACCTGGCTGTGGTTTCAGGGCTCTTACCTCAGACTCTGTCATACTAGAGCTAGCTTGGTGATGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCTAAGTGTCTTAACTGTGTCCTAGCTATAGTTGTTTTCTCTATATGTCTATACCTATGATTTTGTGAAGTTACATTTCTTATAGAATGTAATTTGCAACCATGTTCAAAGATAAAGTGAAACTGGAAAAATGATTAAGAAACCATGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031971:ENSRNOT00000051211:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.4=62.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGTGGACCAAAGCATC
R:
ACAAGGTCAGCAAACACAGCA
Band lengths:
349-2307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]