HsaINT0135663 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9344789-9345335:-
Coord C1 exon
chr12:9345108-9345335
Coord A exon
chr12:9344853-9345107
Coord C2 exon
chr12:9344789-9344852
Length
255 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TCACTGTTTTTTCATTTCAGATC
3' ss Score
12.05
Exon sequences
Seq C1 exon
GTTTTCACTGTGCATCCCAACTTGTGTTTTCACTATTCATGGGTAGCAGAAGACCACCAGGGTGCTCAGCACACTGCAAATCGTGTTTTCTCCTTAAGTGGAAGTTACATTCACCTGGAGCCTGTGGCTGGTACCCTGCCCTGTGGCCACACGGAGACTATCACGGCACACTATACACTGAATAGACAGGCCATGGGAGAGTTATCGGAGCTCAGTTTCCATTACCTG
Seq A exon
GTAAGAATGAGGCCATGGAATACAATTGCAGCTTATCAGTAGGACAAAAGTGGTCAATAGGCTCAGGAATGTCAAAATAAACTACTTGCACACAGCCACCTTGTGTTCTTGTTGTGCGTCCTTCATTCCATGAGTTTTCTTGAGGTTGATTCTCTCCAGCACAGACTTGACAACTGAAAGTGGGTCATGTGGGGAATAGAAGGCTGAGAACTGTGTCCAGCTCAAGAAATTTCCTTCACTGTTTTTTCATTTCAG
Seq C2 exon
ATCATGGCTAAGGGAGTCATCGTCAGATCTGGAACCCACACTCTGCCTGTGGAGTCAGGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PU(26.2=51.3)
A:
NA
C2:
PF077039=A2M_N_2=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCACTGTGCATCCCAACT
R:
TGACTCCACAGGCAGAGTGTG
Band lengths:
285-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)