HsaINT0135672 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9163668-9164259:-
Coord C1 exon
chr12:9164133-9164259
Coord A exon
chr12:9163790-9164132
Coord C2 exon
chr12:9163668-9163789
Length
343 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCAATATTCCTTGTTTTAGGGA
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTCAGTGTGCAGCTGAAAGCCTCTCCAGCCTTCCTAGCTTCCCAAAATACAAAGGGAGAAGAATCCTATTGTATCTGTGGAAATGAGAGACAAACCTTGTCTTGGACAGTGACTCCTAAAACTCTGG
Seq A exon
GTGAGTGACAGTACCCAAAAGGGCCTATCAATCAACAAGGACGGTGGCTGTCTGAGTACTTTTTTCATCATATTCTCTCTTTTATTTGCCATAGATATAATTCTATAAAGTTAGTTTTTTTTCCTATTTCTATCCACTATGACCTCCTCCCACTGTTCTCACCCAAGCTAGTCCCCAGAATCACTATCTTGGACATTGGCTACTTAGTATACATTAACCTTGTGGGTTTCTTTTTTTTTAGCCTTATTTTCTATTCTGGACAACTATAAGTTTAAGGTGCAGCCCTTAAAGGTGATTGGACTATCAAAGTGGATACTCATGTTTTCAATATTCCTTGTTTTAG
Seq C2 exon
GGAATGTGAACTTCTCAGTGAGTGCAGAGGCAATGCAGTCCTTAGAACTCTGTGGAAATGAGGTTGTTGAGGTCCCTGAGATTAAAAGAAAAGACACAGTCATCAAAACCCTGTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCAGCTGAAAGCCTCTC
R:
CCAACAGGGTTTTGATGACTGTG
Band lengths:
240-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development