MmuINT0102582 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121825448-121825955:+
Coord C1 exon
chr6:121825448-121825574
Coord A exon
chr6:121825575-121825833
Coord C2 exon
chr6:121825834-121825955
Length
259 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTCTGGACTGTTTGTTTCAGGGA
3' ss Score
8.68
Exon sequences
Seq C1 exon
ATGAGTGTGCAGCTGGAAGCCTCTCCTGATTTCACAGCTGTCCCAGTGGGAGACGACCAAGATTCTTACTGCCTCAGTGCCAATGGGAGGCACACCTCATCCTGGCTGGTAACTCCCAAGTCTTTAG
Seq A exon
GTGAGTGAAAATTTTGTGAGGGGGATCTACCCAGAAAAGGTAAGTATAGGGAAGTTTCTTCAGTTACTTTCTTCTCATTGGGTCCCAAAGAGGAAGTGCCCAGTCATTACTAACTCTGGTGTATGCTTACTGCACCTTTAATACAAGACAAGCTCTTGGACCACTCCTAGAAACAAGGATGACCTACAGATCTAGGGGCTTTGGCAGGAGCCAGGTTCCTGGCAGATCTGAACTCAGCTCTCTGGACTGTTTGTTTCAG
Seq C2 exon
GGAATGTGAATTTCTCTGTGTCTGCGGAAGCACAACAGTCCTCAGAGCCCTGTGGTTCTGAGGTGGCCACAGTTCCTGAAACTGGGAGAAAGGACACAGTAGTCAAAGTCCTGATAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF0020717=A2M=PD(4.4=9.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGTGCAGCTGGAAGC
R:
CTATCAGGACTTTGACTACTGTGTCC
Band lengths:
244-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: