HsaINT0135680 @ hg19
Intron Retention
Gene
ENSG00000126838 | PZP
Description
pregnancy-zone protein [Source:HGNC Symbol;Acc:9750]
Coordinates
chr12:9307212-9309951:-
Coord C1 exon
chr12:9309771-9309951
Coord A exon
chr12:9307436-9309770
Coord C2 exon
chr12:9307212-9307435
Length
2335 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCTTTTTCTCACCCTTAAGACA
3' ss Score
5.28
Exon sequences
Seq C1 exon
AACCCTATTGTTCGCAATGCCCTGTTCTGCCTGGAGTCAGCCTGGAATGTAGCAAAGGAGGGGACCCATGGGAGCCATGTCTACACCAAGGCATTGCTGGCCTATGCTTTTTCCCTACTGGGAAAGCAAAATCAGAATAGAGAAATACTGAACTCACTTGATAAGGAAGCTGTGAAAGAAG
Seq A exon
GTGAGAGCACTTATAAGTGGGAGCTGAACAATGAGAACACATAGACACAGGGAGGGGAACAGCACACATTGGGGCCTGTCTGGGAGGTGCGGAGAGGGAGAGCATCAGGATAGATAGCTAATGCATGGGGGACCTAATAACCAGGTGATGGGCTGATACATGCAGCAAACCACCATGGCACACCTATGTAACAAACCTGCACATCCTGCACATGTACCCCAGAACTTAAAATAAAATAACATTTAAAAAATAAATAAATAAATAGATAAATAATAAAAGTTTTTTTAAAAACTGTGCAAAAAAAGGTGAGAGCAAACAGCAAATGGTACCAAATTTCCATTTCCATTTACACTGATTCTACAAAAAGAAGAAATATATTCCTTCTGAAATCCACAAGCTTCATCTGTAATTCCTTAGCCAAGTCATACATTGTGAGATCAGAGCACCTCTTATAAAACTGTCTTCTCTGGGATTGCATATGTTACACAGAGCAGAACATAATAGACATAATGCTGCAGATAAATAATGCAGTTTTATTTCTACTTGCTAAAACCAATATAATAGACAAATAGATTCATTTTCTCATGATTTCTCTCTACTTACTTGAATGAAAAGAGGTACAACAGCTCTTCCATACCCCCTAAATTCCCACCCAATGCCGTCCTGGCTGCACCATGCTCACTTCATGCTCTGGGCTTCTCCTAAGCTAGTGCTGCTATAGTCTCCTTTCAGCTACCATCATAATTATCTACCAGGATCTCATCAGCCACGCTGAGATGTTCTCTGACATTTACAAGATCCAGAGATGGAGGAAGGACTGTGCCTGGAGGTGGAGGGGAAGATGGTCAGTAGGACAAAGGGTGACATTGATGACTCGCTTATTGGTGGAGATGCCTTCACTGAAGTTTCCCAAAGCGAAGGTACTGGAAGCAGAGTAATCATTGGTGTTGATATTGTCATGAACAATCACTTGCAGGAACTGACTTCACAAAAGAAGCCTACAAGAAGTACATCAAAGCTGACATAAAATCAAAGACAAACTTAAAGAACAGAGACCAGAAACAGTAAAACCTTTTATAACAGGAGCTGCAGAACAAATCAAGCACACTCTTTCTAATCTCAGAAACTACCAGTTCTTCATTTGATCTTAGCCAAAAGGTCAAGAAGCAATAAAAACTACCAGTTCTTTATTGGTGAAAACATGAACCCATATGGCATGCTGCCTCTGCTGGACTACCATGAGGATGGTGTGACTCCATAGATGATTTTCCATGGTTTAGAAATGGAAAAATGTTAACAAATTTGGCAGTTACTTTGGATGTATCACCTGTCATAACTGGCTTCTGCTTGTCATCCATACAACACCAGGACTTAGACAAGTAGAACTGATGTCATCTTGAGATCTTCATTTATTTTGACCATGATTTATTTGGAGCAGAGGCATTGTTTTTAAGGAAAAAATGTCATAGAGGTTGTCTAAAAACAAAATGCATTCAAACTCATTTGAAAGAGTGTCATTTAGTTTAGTACATATTTAAACTCAATCTATCTTGTAGTGTTCTTGGAGAAACTAGAGTCTGGTTGTAGACCACTACTAGAAAGAACACAACTGCCATGAGATAACTTCTACAGTGGAAACTATTTCTGAGTATGGAGTACAAAAACAACAACAACAACAACAATAACAACAACAAAAAACAAAACAAGAATCAAAAGTTTTAATTCTGAGTTGAATTAGCAGGAAAGAACATGCTTATAGCAGTGCCAACATTTGAAGTGGTGCCTTATACATTTCATCACCTACAATGGAAGTAGTTAACTCTGGAAGAGGTTACAAAACAACAAAAACGGACTGATTCAGTTGGAGAGAAAAAAAAAGAAAGAAAAGAGGTACAACAAACAGAAAATGCAATAACATTTTCAAACTATTTTTATCTCTATTTGCCAGAGAGAGCATCACAAAAGTCACATGAGGTCAATAGTTAAGTTTTATATTCTAGTCTATACTGCAATTCTCAGAAAATATCACGAACAATAAAAGAACTCTCTCTACCACTTTTCTCTTTCATCAGTCCAACTAAAATAACATTGGAGAGATTGGTGAGTATGCTCTATGCTTCTTCCTCCATCAACCTACCCTACCTTCGTACCACAGGACTAAATCAAGTTCAGCATAGAAGTGTGAGTTAGTGAGTTTTAGGAGTTTATGACATAGAAGACCTTGCTTCTCCTGTATTATTTTCAGCTCCATGTATTATGAATGTGCATTCTCTTATCTACCAGTTATAATTACTTATTGATGAGTTACAATTATCTCCTTTTTCTCACCCTTAAG
Seq C2 exon
ACAACCTCGTCCATTGGGAGCGCCCTCAGAGACCCAAGGCACCAGTGGGGCATCTTTACCAAACCCAGGCTCCCTCTGCTGAGGTGGAGATGACATCCTATGTGCTCCTCGCTTATCTCACGGCCCAGCCAGCCCCCACCTCAGGGGACCTGACCTCTGCAACTAACATTGTGAAGTGGATCATGAAGCAGCAGAACGCCCAAGGTGGTTTCTCCTCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838-PZP:NM_002864:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.227
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)