MmuINT0102590 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121831700-121832823:+
Coord C1 exon
chr6:121831700-121831880
Coord A exon
chr6:121831881-121832599
Coord C2 exon
chr6:121832600-121832823
Length
719 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TCTCAATTTTTAACCCTAAGACA
3' ss Score
3.13
Exon sequences
Seq C1 exon
CATCCTGTTGTCTCCAAAGCCCTGAGCTGCCTGGAGTCATCCTGGAAGACCATAGAACAAGAACGAAATGCCAGCTTTGTGTACACCAAGGCTTTGATGGCCTATGCTTTTGCTCTGGCGGGGAACCAGAATAAGAGAGATGAAATCCTGAAGTCACTTGATGAGGAAGCTATAAAAGAAA
Seq A exon
GTAAGACTGTGTTCTAAAGTTTCTCTTTATTTAGCTCCTGTGAAGAAAAGCAGGTGAGCACATGGAGCATGGATAGCGCTGTTAGTCCCGAATCTTTGGCATACTGAGGTTTCTCCTTGGACTGCCCCATGAAGAAATGAGTCTTCTTTCTACACAACAACCTTCTCTTTGGTATTTTCTGACAGTGTGACCAAAATCAGCAAATATACAATCATAGTAGAATGCACACAGGTCAAACTAGGTTACAAAGGTGAATGTATTTAAAGCTTAGCTTTTCTCTCTGCTAAGGATATACCTACCAGGAGCAGTAAAGACTATGAAGAACACAAAGAGGAAAGATGCATCAAGGTTTTCAATTGCAACTCTAAACCCACTGGGAAACTTTACTAAATCATTTGGTGTGAACACTGAACAAGCAACATTTTGTTCGGTGTGAGGGAGCTAAGGAGTAAAAGAATTATGTCTGCCATTGTCTCCTCAACTAGAGCACCATTGAGGAATGGTTTAGTTAATAACTTACACATTTCTTTCATGGGCTTTCTCAATCACAATCCATTACACCAACTGGAGATTTTTACTGAGGATTAGCAAATCTGGGCATACTGGGAGTGAAATTTTTGAAACCCTCTACAATCTTTTATAGTTCCTTCTTTCTACATATGAACTTGAAATCATTGACCACTCAGACTTTAAATTATTTCTCAATTTTTAACCCTAAG
Seq C2 exon
ACAACTCTATCCACTGGAAAAGACCTCAGAAATCCAGGAAATCTGAACACCATTTGTACAAACCCCAGGCTTCCTCTGCTGAAGTAGAGATGAATGCATATGTGGTCCTGGCTCGCCTCACTGCCCAGCCAGCCCCATCCCCTGAGGATCTGACTTTGTCAATGAGCACCATCATGTGGCTCACAAAGCAACAGAATTCCAATGGTGGCTTCTCCTCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.320
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.3=100)
A:
NA
C2:
PF076789=A2M_comp=FE(28.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTGTCTCCAAAGCCCTG
R:
CCACATGATGGTGCTCATTGAC
Band lengths:
357-1076
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: