HsaINT0135688 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9148840-9149602:-
Coord C1 exon
chr12:9149561-9149602
Coord A exon
chr12:9148995-9149560
Coord C2 exon
chr12:9148840-9148994
Length
566 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGTTTTTCTTTTCTCCATAGATA
3' ss Score
12.03
Exon sequences
Seq C1 exon
ATGAGTCTGTGGTTGCTGAGTATATCGCCCCCTGCAGCACAG
Seq A exon
GTAAGAGTTCACCACTTATGACCAGTACTAGATGGCATTAACCCACTCTCCAAGGGCCCCTGCAATTTAAATTCTCTACAAGGCTTTTCCTACATCTGAGACAATCCACATGGCATGTCCTCACACCAAGACAAAACTGTGGCGTAGCATGCCTATTCTGTAGCGGACTCTCCAATTTCAGATATTCACTCCCAGAAAAGTCAATAAGCTTTGTTTATTTGTAGGACAGCTATCTCTAAAAGCGACATTTCACTTCACAGCTAATTGGGCTTCCTTCAACACAATGGTCAACTAATCACACACCTAAAACCAAATCTAGCCTTACACTTAATTTTGTAAATGAAGCTTTATTGGCACATGGCCACACTTATTATTAACATTGGCTATGGCTGCCTTTGTGTGCTGATTAGTCATGACAGACCACATGGCATATAAACCTAAAATAATTACCATCTGGCCTTTCACAAAGTTTCCTGACCCTGCATAAGCTCACTCTGCTGCCCACACTCAACTGAATGCTCCTCAGGAAATGATACAACCTCCTTACGTTTTTCTTTTCTCCATAG
Seq C2 exon
ATACAGAGCATGGAAATGTTTGAGGACCATACAGGCTGTATATTTTGGTGGATTCTCTGTCCTATACATTTACTTAGAAGGAATGGAGTTATTTGTCTCTATAAAATAGACACTAAAAATATTTGCTGAATAAATATGTACTTCTGGTCAAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=46.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTCTGTGGTTGCTGAGT
R:
GACCAGAAGTACATATTTATTCAGCA
Band lengths:
191-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development