HsaINT0135709 @ hg38
Intron Retention
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49098353-49098692:-
Coord C1 exon
chr3:49098600-49098692
Coord A exon
chr3:49098481-49098599
Coord C2 exon
chr3:49098353-49098480
Length
119 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCCCTCCCCCCACTTCCAGGGC
3' ss Score
12.3
Exon sequences
Seq C1 exon
GAGCCAGAGCCAGGATTTAAGCGCCTGGCTTGGGGCCAGCCTGTGGGCCTGAGGCATACAGGCTACGTCATTGAGCTGCAGCATGTTGTCAAG
Seq A exon
GTGAGAGCCAGCTGCAGCCTTCCTACTGCAGTGCCTGCTGGGGCCAAGATGTGAGTATAGCCTGCAGTCCTGGTTGTGGTTCCCGGGTCTAATTGCTGCTCCCCTCCCCCCACTTCCAG
Seq C2 exon
GGCCCCAGTGGTTGTGTAGAGAGTCTGGAGGTGACCTGCAGACGGGCAGATGCTGGAGAGAAGCCAAAGGCCTTTATTCACTGGGTGTCACAGCCTTTGATGTGTGAGGTTCGCCTCTATGAGCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=PU(35.4=90.3)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)


Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGCCAGGATTTAAGC
R:
AGTCGCTCATAGAGGCGAACC
Band lengths:
220-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development