BtaINT0120956 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51490413-51490747:+
Coord C1 exon
chr22:51490413-51490505
Coord A exon
chr22:51490506-51490619
Coord C2 exon
chr22:51490620-51490747
Length
114 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CAGGCCCCGTGACTTCCCAGGGC
3' ss Score
5.8
Exon sequences
Seq C1 exon
GAGCCAGAGCCAGGCTATAAGCGCCTGGCATGGGGCCAGCCCGTGGGCCTGAGGCATACAGGCTACGTCATCGAGCTGCAGCATGTTGTCAAG
Seq A exon
GTGAGAGCCAGCTGCAGGCTTCCTGCTGCAGTGCCTGCTGGGGTGAGGATCTGGTGCAGCGTGCAGTCCTGGTAGCAGGGTCCAAGTCTGATCGCAGGCCCCGTGACTTCCCAG
Seq C2 exon
GGCCCCAGTGGCTGTGTGGAAAGCCTCAAGGTGACCTGCAGGCGCGCAGATGCTGGTGAAAAGCCCAAGGCATTTATTCACTGGGTATCACAGCCTCTGACATGTGAGATCCGCCTCTATGAGCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928:ENSBTAT00000025191:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCCAGGCTATAAGCG
R:
AGTCGCTCATAGAGGCGGATC
Band lengths:
218-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]