BtaEX0029247 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51490413-51490907:+
Coord C1 exon
chr22:51490413-51490505
Coord A exon
chr22:51490620-51490747
Coord C2 exon
chr22:51490841-51490907
Length
128 bp
Sequences
Splice sites
3' ss Seq
CAGGCCCCGTGACTTCCCAGGGC
3' ss Score
5.8
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGCCAGAGCCAGGCTATAAGCGCCTGGCATGGGGCCAGCCCGTGGGCCTGAGGCATACAGGCTACGTCATCGAGCTGCAGCATGTTGTCAAG
Seq A exon
GGCCCCAGTGGCTGTGTGGAAAGCCTCAAGGTGACCTGCAGGCGCGCAGATGCTGGTGAAAAGCCCAAGGCATTTATTCACTGGGTATCACAGCCTCTGACATGTGAGATCCGCCTCTATGAGCGACT
Seq C2 exon
ATTTCAGCACAAGAACCCCGAGGATCCTGCTGAGGTGCCTGGTGGATTCTTAAGTGACCTGAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928-'26-26,'26-25,28-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
PF0395013=tRNA-synt_1c_C=FE(22.5=100)
C2:
PF0395013=tRNA-synt_1c_C=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCAGGCTATAAGCGC
R:
CGGGTTCAGGTCACTTAAGAATCC
Band lengths:
156-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development