DreEX6051567 @ danRer10
Exon Skipping
Gene
ENSDARG00000010316 | qars
Description
glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
Coordinates
chr8:46351945-46354227:-
Coord C1 exon
chr8:46354135-46354227
Coord A exon
chr8:46352105-46352232
Coord C2 exon
chr8:46351945-46352011
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCTATTTTTCTCTCTTCAGGAT
3' ss Score
12.5
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGATGGAGAAGGGTTATAAGCGCCTGACTCCAGATCAGTCAGTGGGCTTGAGATATGCAGGATACGTCATCTCTGTACAGCGTGTCATCAAG
Seq A exon
GATGACCGTGGTAAAGTATGTGAGCTCGAGGTGACCTGCGTCAGCTCCGACACTGCAGAGAAACCCAAAGCGTTTATTCATTGGGTGAGCGAGCCACTGCTGTGTGAAGTGCGCCTCTATGAAAGACT
Seq C2 exon
GTTTCTTCATAAAAACCCAGAGGACCCGGCGGAAGTTCCTGCTGGATTCCTGAGTGACATTAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010316-'21-25,'21-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)
C2:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGGGTTATAAGCGCC
R:
GGGTTAATGTCACTCAGGAATCCA
Band lengths:
155-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]