GgaEX7007871 @ galGal4
Exon Skipping
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11585465-11585922:+
Coord C1 exon
chr12:11585465-11585557
Coord A exon
chr12:11585628-11585755
Coord C2 exon
chr12:11585856-11585922
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCCCCCCACCCCAGGAT
3' ss Score
8.73
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GAGGCAGACAGGGGCTACAAGCGCCTGGCCCTCGGGCAGCCAGTGGGGCTGCGGCACACCGGCTACGTCATCGCCGTGCAGAACGTCATCAAG
Seq A exon
GATGCCCGTGGGCGTGTCATTGAGCTGGAGGTGACCTGCACCAAGTCTGACGCAGCGGAGAAGCCCAAAGCCTTCATCCATTGGGTGTCAGAGCCGCGGGTGTGCGAAGTGCGGCTGTATGAGCGGCT
Seq C2 exon
GTTTTTGCACAAAAACCCCGAGGACCCTTCGGAGGTGCCGGGTGGATTCCTGAGCGACCTCAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853-'26-32,'26-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.217
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)
C2:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGACAGGGGCTACAAG
R:
TTGAGGTCGCTCAGGAATCCA
Band lengths:
156-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]