Special

HsaEX6055949 @ hg19

Exon Skipping

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49135625-49136125:-
Coord C1 exon
chr3:49136033-49136125
Coord A exon
chr3:49135786-49135913
Coord C2 exon
chr3:49135625-49135691
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCCCCACTTCCAGGGC
3' ss Score
12.3
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGCCAGAGCCAGGATTTAAGCGCCTGGCTTGGGGCCAGCCTGTGGGCCTGAGGCATACAGGCTACGTCATTGAGCTGCAGCATGTTGTCAAG
Seq A exon
GGCCCCAGTGGTTGTGTAGAGAGTCTGGAGGTGACCTGCAGACGGGCAGATGCTGGAGAGAAGCCAAAGGCCTTTATTCACTGGGTGTCACAGCCTTTGATGTGTGAGGTTCGCCTCTATGAGCGACT
Seq C2 exon
ATTCCAGCACAAGAACCCTGAAGATCCTACTGAGGTGCCTGGTGGATTTTTAAGTGACCTGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-'36-44,'36-43,38-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.032 A=0.000 C2=0.065
Domain overlap (PFAM):

C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)
C2:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGCCAGGATTTAAGC
R:
TCAGGTCACTTAAAAATCCACCAGG
Band lengths:
154-282
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains