MmuEX6068933 @ mm10
Exon Skipping
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108514543-108515033:+
Coord C1 exon
chr9:108514543-108514635
Coord A exon
chr9:108514746-108514873
Coord C2 exon
chr9:108514967-108515033
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCATCTTCCTCACTTCTAGGGC
3' ss Score
11.05
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GAGTCAGAACCAGGCTATAAGCGCCTAGCTTCGGGCCAGCCTGTGGGCCTGAGACACACTGGTTATGTCATTGAACTGCAGAATATTGTCAGG
Seq A exon
GGCTCCAGTGGCTGTGTGGAACGCTTGGAGGTGACCTGTAGACGAGCTGATGCTGGAGAGAAGCCCAAGGCCTTTATTCACTGGGTATCACAGCCTTTGGTGTGTGAGATTCGCCTCTATGAGTGCCT
Seq C2 exon
ATTCCAGCACAAGAACCCCGAAGACCCTGTTGAAGTGCCTGGTGGATTCCTAAGTGACCTGAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-'46-58,'46-52,51-58=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=0.001 C2=0.126
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)
C2:
PF0395013=tRNA-synt_1c_C=FE(11.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACCAGGCTATAAGCGC
R:
CGGGTTCAGGTCACTTAGGAA
Band lengths:
157-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types