HsaEX6055949 @ hg38
Exon Skipping
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49098192-49098692:-
Coord C1 exon
chr3:49098600-49098692
Coord A exon
chr3:49098353-49098480
Coord C2 exon
chr3:49098192-49098258
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCCCCACTTCCAGGGC
3' ss Score
12.3
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GAGCCAGAGCCAGGATTTAAGCGCCTGGCTTGGGGCCAGCCTGTGGGCCTGAGGCATACAGGCTACGTCATTGAGCTGCAGCATGTTGTCAAG
Seq A exon
GGCCCCAGTGGTTGTGTAGAGAGTCTGGAGGTGACCTGCAGACGGGCAGATGCTGGAGAGAAGCCAAAGGCCTTTATTCACTGGGTGTCACAGCCTTTGATGTGTGAGGTTCGCCTCTATGAGCGACT
Seq C2 exon
ATTCCAGCACAAGAACCCTGAAGATCCTACTGAGGTGCCTGGTGGATTTTTAAGTGACCTGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-'62-65,'62-63,66-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=PU(35.4=90.3)
A:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)
C2:
PF0395013=tRNA-synt_1c_C=PD(15.9=91.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGCCAGGATTTAAGC
R:
TCAGGTCACTTAAAAATCCACCAGG
Band lengths:
154-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains