RnoINT0121191 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117304331-117304661:+
Coord C1 exon
chr8:117304331-117304423
Coord A exon
chr8:117304424-117304533
Coord C2 exon
chr8:117304534-117304661
Length
110 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
AACATCTTCCTCACTTCTAGGGC
3' ss Score
10.09
Exon sequences
Seq C1 exon
GAGTCAGAACCAGGCTATAAGCGCCTAGCCTGGGGCCAGCCTGTGGGCCTGAGACACACTGGTTACGTCATTGAACTGCAGCATGTTGTCAGG
Seq A exon
GTAAGAGACAGCTGCAGTCTTTTTGTACAGTGCCTGCTGGGGCCAAGCTTGTGTGGAGCAAATAGTCATCATGTTGGTCCCTGGTCTGACAACATCTTCCTCACTTCTAG
Seq C2 exon
GGCTCCAGTGGCTGTGTGGAATGCTTGGAGGTGACCTGTAGACGAGCTGATGCTGGAGAGAAGCCCAAGGCCTTTATTCACTGGGTGTCACAGCCTCTGGTGTGTGAGATTCGCCTCTATGAGCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0395013=tRNA-synt_1c_C=FE(16.0=100)
A:
NA
C2:
PF0395013=tRNA-synt_1c_C=FE(22.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACCAGGCTATAAGCGC
R:
AGTCGCTCATAGAGGCGAATCT
Band lengths:
218-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]