HsaINT0137658 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102594447-102595369:-
Coord C1 exon
chr7:102595305-102595369
Coord A exon
chr7:102594560-102595304
Coord C2 exon
chr7:102594447-102594559
Length
745 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGACCTGCGGTGGTCCCCAGGTG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTGAGACCAACACCCTGTTCCGGAGCAACTCTCTGGCCTCAAAGTCCATGGAGTCTTTTCTGAAG
Seq A exon
GTGAGGTTGCATGCTATATTGTCCTCATCTTGCAAATGACAACACTGAGCTTCAGAGAGCGACAGAGGGGGCTGGGACTTCGACTCCAGTGTTCTATCTCCATATTCAGAGCCCTTTAAGGTTAAGAATGTGGCTGGGCATAGTGGCTCATGCCTGTAATTGCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACTTAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCTGGCATGGTGGTGGGCACCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGACTCACTTGAACCAGGAGCCAGAGGTTGTAGTGAGCTCACGCCACTGCACTCTAGCCTGGGCCCCGTGCTAGACTCCGTGCCCCGCACCCCCCCCCCCCAAAGAGAATGTGTGTGTGATTAAAATTTAAGTTAGAGACAGTCTCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCTGCCTTGGCCTCCCAAAGTGCTAGGATTACAAGGGCTAAGAATTCTAGTCATTCATTCACTCACTCATTCATTCATTCATGAATAAACAGTTTGCCCTGCATGTGTACCTGGCCCCCTCCTGGGCGGATACGGCAGGCAAACGGTGCAAGGGCGGCTGCCGGGAGAAGGTGGGCAGCTGGAGTGGGACTGGGGGAGACAGGATCAATGTGACCTGCGGTGGTCCCCAG
Seq C2 exon
GTGGCCGGGATGCAGTACCTGCACGGCGTCCTGGGCCCCATCATCAACAAGGTGTTTGAGGAGAAGAAGTACGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(11.1=100)
A:
NA
C2:
PF0061614=RasGAP=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains