HsaINT0137659 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102594050-102594559:-
Coord C1 exon
chr7:102594447-102594559
Coord A exon
chr7:102594243-102594446
Coord C2 exon
chr7:102594050-102594242
Length
204 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ACCCGCCCCGTTCCACGCAGGTG
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTGGCCGGGATGCAGTACCTGCACGGCGTCCTGGGCCCCATCATCAACAAGGTGTTTGAGGAGAAGAAGTACGTGGAGCTGGACCCCAGCAAAGTGGAAGTTAAGGATGTAGG
Seq A exon
GTGAGGCCGGGGGTAACTCCGGGGGTTGCGGGGTGCAGCGGCAGCGGGTTGGGATCAGGCCCTGTCAGCATGTGTGTTTGTGCTTCTGCCCACCCGTGTATTGTCCCCTGTGTCCGTGTCCTGGCTGCTGTGAGAGCCACTGTTCCTGTCGTGGCCCTGGCGCTGACCGCGACCTCCTCTGCCAACCCGCCCCGTTCCACGCAG
Seq C2 exon
GTGCTCCGGGCTGCACCGCCCGCAGACCGAGGCCGAGGTGCTGGAGCAGAGCGCGCAGACGCTGCGCGCCCACCTGGGGGCCCTGCTGAGCGCGCTCAGCCGCTCGGTTCGCGCGTGCCCCGCCGTGGTGCGCGCCACCTTCCGCCAGCTCTTCCGGCGCGTGCGCGAGCGCTTCCCCGGCGCCCAGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(19.5=100)
A:
NA
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCGGGATGCAGTAC
R:
GGAAGAGCTGGCGGAAGGT
Band lengths:
268-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains