HsaINT0137662 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:102592285-102593138:-
Coord C1 exon
chr7:102592994-102593138
Coord A exon
chr7:102592455-102592993
Coord C2 exon
chr7:102592285-102592454
Length
539 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
CTCCCTCCCTGGCCTGGCAGAGC
3' ss Score
9.26
Exon sequences
Seq C1 exon
GCAGTCCAGAACGTGGGCAACATGGACACGCCGGCTTCCAGGGCCAAGGAGGCTTGGATGGAGCCGCTGCAGCCCACCGTGCGCCAGGGCGTGGCGCAGCTGAAGGACTTCATCACCAAGCTCGTGGACATCGAGGAGAAGGACG
Seq A exon
GTGAGCGCCGCCCTGCACAGACCCGCCCACAGCCTACTGCTGACGTTTGCTCCGCCCTTGAGCCCCACGGCCCCACCCATCGCTGTTTGTTCCTCTCGTGGCCCCACCCACCGCCTGCTGTTGGCATTTGCCAGGCCCCCAGGCCATAGACCCACGCACCACTGTTTGTGCTTCCTGTGACCCTGCCCACTGCCTGCCGTTGACGTTTGCCCCACCCCTAGACCCATGGCCTCACCCCCCCATCATCTGCGCCTGTTGACATTTGCTCCATCCTTGAGCTCCATAGCCCCGCCGCCACCTGCTACTGACGCGTGTCCCGCCTCCAAGCCCATGGCCCTGCCTTCCTCAGTCCACCTGTCACCCCGCTCACCACCAGCTGTTGATGTTTGCTCCGCCCTTGAGCCCCATGACTACGTCCACTGCCTGCTGTTCAGATTTGCTCAGCCCTTGAGCCCCATGGCCCCTCCCACTGCTCCGCTCCCCCCAGTCCCGCCCTCATTCACTGGGCTCTCTATTCCCCTCCCTCCCTGGCCTGGCAG
Seq C2 exon
AGCTGGACCTGCAGCGGACGCTGAGTTTGCAGGCGCCACCTGTGAAGGAGGGGCCACTCTTCATCCACAGGACCAAGGGCAAGGGCCCCCTCATGTCCTCCTCCTTCAAGAAGCTCTACTTCTCCCTCACTACCGAGGCCCTCAGCTTCGCGAAGACGCCCAGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808:ENST00000262940:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
NA
C2:
PF0016924=PH=PU(40.6=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAACGTGGGCAACATGG
R:
CTTGGAGCTGGGCGTCTTC
Band lengths:
310-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains