HsaINT0137670 @ hg19
Intron Retention
Gene
ENSG00000105808 | RASA4
Description
RAS p21 protein activator 4 [Source:HGNC Symbol;Acc:23181]
Coordinates
chr7:102246305-102249269:-
Coord C1 exon
chr7:102249208-102249269
Coord A exon
chr7:102246435-102249207
Coord C2 exon
chr7:102246305-102246434
Length
2773 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TGGCTGAGCTGACCCCACAGGTT
3' ss Score
4.47
Exon sequences
Seq C1 exon
CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG
Seq A exon
GTAAGTTCTCCCTTCCCTCCCACACTGGTCTGCCCAGTCCCTGGCCTCCCTCCCACTCGGAGACCTCCCCTCTAGGCTCCGTCTGGTCTCCTGCTCAGGGAAAGCCATTTCTACTCTCCCCAGAAGCCGGGGCCACGTTCTGTACTCCTGGCCTCTGTTCTGCAGCATGTTCCCAAGCCTGGTTGTTACTGCCTCTTCCCTAGGGTGAAGAGGGGCTGCTATGGGTGGAATCTGAGGCCTCTGCTGGCAGAAGAAGGGGCCTCCTTACACTCTATTGCTGAAGCATAGGGACCCCTTCTCCAAATCAGGCCAGCTCCTTCTGTAACCCATGGGGTCGCCTCCATCTGGGCCCTAGTACTACTGTGTCCTAAGTCTGAAGGGTTGGCCTAGAGCCAGTCCAGGCTGGAGATCCCTTTCAATTATTTCTGGGATGCAGACATTGTTTTGTGTTATTGTTTTTACAATTTTTATATAGTTTTTTTTTAAAAAAAAGGCCGGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAGTACAAAAAAATTAGCTGGGCGTGGTGGCAGGCACCTGTAGTCCTAGCTACTTGGCAGGCTGAAGCAGGAGAATGGCGTGAACCTGGGAGGCAGAGCTTGCAGTAAGCCGAGATCGCGCCACTGCACTCCAGCCTCAGCAACGGAGCAAGACTCCACCTCAAAAATAAATAAATAAATAAATGAATAAAAAATAAAAATAAAAAATAAAATAGAGGCCGGGTGCAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCTAGACGTCGTGGTGGGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGTCAAGATCACGCCATTGCACTCCAACCTGGATGACAGAGCAAGACTCCATCTCCAAAAGAAAAACAAAGATGGAGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGTGGCAATTCACTTGAGATTAGGAGTTCAAGACCAGCCTCGTCAACATGGTGAAACCCTGTCTCTACTAAAAATATAAAAATTACCTGGGCATGGTGGCACTCACCTGTAATCCCAGCTACTGGGGAGGCTGAGACAGGAAAATCTCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGCGCCATTGCACTCCAGCCTAGGTGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAATGGAGATGGGGGTCTCACTCTGTTGCCCAGGCTGGTCTTGAACTCCTGGCTTTGACAGATCCTCCCGCCTTGGCCTCCCCAAGGTGCTAGGATTACAGGTGTGAACCACCATGCTCTGCCCAGACATGATTTTGAGGGTTCAGCCCTGTGCCAGCCTCACTGTGTGTGACCTTGGGCAGCTCCTGCCTTCTCTGGGCTTCTCTGAGGGTTCAAACCAGTTCTTGGATGCTATGGGCTCTGCCATCAGAGCCTTTGTGTCCCGCTTACTGGCTTCCCCCCACACACACCTGCTCCTGTCTGTGACGCTGGGCCAGGGATGGGGGCAGGGCGAAGGCAGGTTCTGCTGACTCATGGGGCTTCTTGGCCCCTGCCAGGCCAAAGGCCTTTCCCACCTGCAGCCTTAGCCAGCGTCTCTGGGGTCTAGTGGCCCCAGTGAGGCTATTCCTCCGGGTGCCTTGTAGCTTCCCCATCCAGGCCTCAGACCCTCCTCCCAGCAGCCCTAGGGGAGGGCCACTCTCTTCCTGTTTTAAGATGGGGAATCTGGCTGGGTACAGCGGCCCACACTTATAATCGCAGCACCTTAGGAGGCTGAGGTGGGAGGATGGCTTGAGGTCAGGAGTTTGAGACCAGCCTGAGCAACATAGCAAGACTCCATCTTTTTTTTTTTTTTTTTGAGATGGGGTCTTGCTCTATCACCCAGTCTGGAGTGCAATGGCGCAATCTTGTAGCTTCTCCATCTGGGCCTCAGACCCTCCTCCCAGCAGCCCTAGGGGAGGGCCACTCTCTTCCCGTTTTAAGATGGGGAATCTGGCTGGGTACAGCGGCCCACGCTTATAATCCCAGCACCTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGGTCAGGAGTTTGAGACCAGCCTGAGCAACATAGCAAGACTCCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGGGTCTTGCTCTGTCACCCAGTCTGGAGTGCAATGGCGCGATCTGAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGGAGCTGGGATTACAGGCATGCGCCACCACACCTGGCTCACAGGGTGAGACCCTGTCTCTAAAAACAACAACGACAAAAATGACACAATAGTGAGGGCACAGGCCCCAGGTCACTGACTTAGATTCTAATCCCAGCTCTTCCAACTGCTGTTTCTTCACCTGCGGAGCCTCAGTTTCCCCATCTGTCATTGGGGATACCAGCCCCTGCTTCACGGGTGCCTAGGGGATTCCCAGATTATGGAGGTGCCTCAAGGTGCCTGGTGGGGCTGAGGGTGGAGGGTATGGGGGTTCAGGGCCGGGTCCCTGGCTGAGCTGACCCCACAG
Seq C2 exon
GTTTCAGCGGGTGGGCCCACCTGACGGAGGTCGACCCCGATGAGGAGGTGCAGGGCGAGATCCACCTGCGGCTGGAAGTGTGGCCAGGGGCCCGGGCCTGCCGGCTACGCTGCTCTGTGCTGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808-RASA4:NM_006989:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
NA
C2:
PF0016825=C2=PU(22.2=18.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)