HsaINT0137680 @ hg19
Intron Retention
Gene
ENSG00000111344 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:9873]
Coordinates
chr12:113545890-113550083:-
Coord C1 exon
chr12:113549891-113550083
Coord A exon
chr12:113546031-113549890
Coord C2 exon
chr12:113545890-113546030
Length
3860 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TTACCTTCTGCTCCTCCCAGCAG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GAGGATCTCCTTCAAAGGCGCACTCTCGGAGGAGCAGATGCGGGAGACCAGCCTGGGGCTGCTGACGGGCTACCTGGGGCCCATCGTGGACGCCATCGTGGGCTCCGTGGGGCGCTGCCCGCCCGCCATGCGCCTCGCCTTCAAGCAGCTGCACCGGCGAGTGGAGGAGCGCTTCCCCCAGGCCGAGCACCAG
Seq A exon
GTGCGCCAGGATGGGAGGCTGAGGCTGGGGACAGGCCGGAGCTTGTCCGGGGTCACTCGGAGGAGTCAGGACAGAACTGTGACCAGAACCTAGGCTGCCGGCACTAGAGCATTCTGTCCTGGCAGAAGTGGGGACAGCGTTCCTGGCAGGGTCCGGGTCCCAAGAATGATAGTAATAATAAAAATAGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGAGGGTGGATCACTTTCAAGTGAAGTGAGGAGTTCGAGACCAGCCTGGCCAACATGATGAAACCCTGTCTCTACTAAAAATACAAAAATTAACTGGGCATGGTGGCTCACACCTGTAATCCCAGCTACTCCGGAGGCTGAGTCAGGAGAATCGCTTGAAGCCAGGAGACAGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGACTGGGTGACAGAGATAGACTCTGTCTCAAAATAAACAAATAAATACCAATAATAAATATAATAATGGCAGCTAACACTCTATGTAGCCTGACCATGGTCCATATCTTGTTTTAGGTGATTTATGTATTTATTACCCTATCTAACCATCACACGCAGCCTGTGAGGTGGATACCAGGATTATTCCCATTTTACGGAGGAGGAAACTGAGGCCCAGAGAGCTTAAGTCACACAGGTAGAAAGGAGTGATATTGGGACTGGCACTCACCCAGGCAGGCTGGCTCCTGAGTCTGTGCTCATAACCAGCAAATAATAGAGTCTGGCACAAAGTAAGTGCTTCTTGAAATTCCAGATGTAAAATAGAGAGAGAGAGAGGAAGTAAGAGAGAAGAACGCAGATCTGGCATACAGTAAGTGCTCAGAAACACCCAGAATAAAGTCTAAAAATGAATCCCTGCAGGTGTAGTGCTATACCAACATGGATAGAAAAGTTGAAAACTCAGATGCTGTGAGTTTCAGGCAGACGAGGCGCAAGAACAAAGCAAGCAGCGCGTGGGGTGGTAGGGAGACATGAAGACTGTGGCCAACTGAAGCCCCCAGATCTTGTCTAAAGGGGGCAGCTCCAGGGGATCACTGCCATATAGGAATGGAAGCCCAGTACTGCCAGATCTTTAGAGATTCTGGATTTTATGTGAGGTTATTTATTTATTTACTTATTACTAACTTTTGAGACGGGGTCTTGCTCTGTTGCTCAGGCTGGAGTGCAGTGGCACAATCATAGCTCACTGCAGCCTCTATCCCAGGCTTGAGTGATCTTCCCACCTCAGCCTCCCGAGTTGCTGGGACTAGAGGGGTGCACCACCACACCCAGCTAATTATTTATTTTTCTAGAGACAGGGTCTCACTGTGTTGCCCAGAGGGTCTCGAACTCCTAGCCTCAAGCAGTCCCCTTGCCTCAGCCTCCCAAAGTGCTGGGACTACAGGCGTGAACCACCGCGCCCGGCCTGATCTCTTATTTTTAAAATGTCAGCATGAATTCACCTGAAAACCAAACACACAAAAACACTTTGGGTCATGCATTACAAAACATTTGTGGTTGGACTGGCCAGTTTGGGACCCCCTGGTTGAATGCTCAGCACACCTCCCGAGGTGGCTGTCATTGTCCTCACTTGCAGATAACATCAGGTGAGATGAACTCTTACGTAGTGCTGATGTATCAGACCAGGATTCACTTTGCAGAAAGACCTAAGACCTGTTACATTTTGGCAATGTCGTAACCCACTTCCTACAGCCTCATTTGAGAGCTTTTGATTTATGCCACATCTCTCTCCACTTCCTGTTTACAGATGGGGAAACTGAGGCCCAGAGAGGCAAAACACTTGGCCAAGGGTTTTCTAGACTCCCAGCTGGGGTCTCTCCCCTCCTCCCCCTCCTCCCCAGCTGAGGAGTAAGCTCTGGGCCTTGAGACTGGGATGTAGCTTGGCTTACACCTCACCTTGCTGGGCTCTCACCTGGGCTGCCAGCAGAGGTGTTAAGTGGGGCACAGCTGTGGCAGGGAACAGGGAAGAAAGGGAGGAGGCCAGCTCCCCAGACAGCCTAGACCTCGTATGGTGAGCCAATATCAGTGACACCCAAGTGTCCTCTAGTTCTCAGCCCCCAAGGTGGCCCTGGAGCAGGGACTTCCTCCGGCCCGGGGAACCCAGGGAAGCCCCTTTCTCTGCTGCACTGACACCGGTTCTTTGCCTTCAAAAAGGAGGAAACAAATGAGCTGATGTGAAGACTGAAATTACCCTGGACTACAGATGGCAGTGGGGTAGTGGTGGGACAGTTCAGGGCTCCAGATGGAGGGGGACAGTTCAGGGCTCCAGATGGAGGGGAAGATGCTCCCTCTGGGCAGTTCTAGGTACCCAGCTCCTACAGGGGTCACTGCCAAGGCCAAGATGCCCCAGGAAGGTGGCACACGCCCCGGGGAGGGCATTGTTTCATGTGTGACTACAACCTCTGAATAAACACAGGCGCAGACTCTCAGGCTAAATATAGCCTGGCAAGTGTGAGAGGTGGGTGGGGAGCTGGTTTGGGGGGAGCAAGATGCACCCAGGATGGAGGGGCACCCTTCCCTGAGTCACCTCTGCTGGTGCTGGGGAACCAGCGTTACCTTTAGATGGGCCAGGCCCCGGATTCACATGGAGGGGAACCATACTCTACAGTTTGTAGAGGGCAGAGGTTGGAGGTGGGGAGGTGCACACAGGATGGACTCTGGAGCCCATCAGACTGGGTTCACTACTGAGCCTCAGTTTCCTCATCTGAAAAAATGGGATAATAGCACTTACCTACCCACATGGAGTTGTTTGAGGACTAAATGTGATAGTTCAGGCTTGGTTTCTAATACTTAGTGAGGGCTCCTTGGTAGCTGGTGTTGAATGGCAGGAGAGTGTGGTGAAGAACAGAGAGTTCAAATCCTTGGCTGGGCGAGGTGGCTTATGCCTGTAATCCTAGGACTTTGGGAGGCTGAGGCGGCTGGATCACTTGAGATTAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACCCCATCTCTACTAAAAAAAAAAAAAAAAACACACACAAAAAAACCTAAAAACAAAAAAAGCAAAACAAAAACTGGCCAGGTGTGGTGGCATATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACTAGAATCACTTGAAACTGGGAGGTGGAGGTTGCAGTAAGCAGAGATCGTGCCACTGCACTCCAGCCTGAACAACAGAGCAAGACTCTGCCTCAAAAAAAAAAAAAAAGAAAGAAAAAAAAAAGAAAAATAATCAAATCCTGCCTAAGTCCAACTCCTGGCTCTGCCGCTTATGGCTGTGCAGACTTAGGCAAGGGACTTTCCCTTGCTGGGCCTCAGTTGCCTCCTCTGTAAAATGGAGATGTGATCCTTCCTGGGTTGAGTATTAAATAAGCGAATGTATAGAGAGGTATCCATCCTGCTGCTGTTATTATCATAAATCACAGGTCTGGGTTTGAATCCTGACTTTGCCACTCATTAGCTGTGTGACCCTGGGCAAATCGCTTGATGTCTCTGAGCTTCTGCTTCCTCATCTGTAAAATGGGACTCATGATGGTGCCTCCCTCTTAGGGCTGTGCTCTTGGCATAGTGCTTGGCACAAAGCCAACTCTGAGGACATTTGGCCAAATCTGCTTTTGTAGGATTGGTTTTGTTATTCCATTTTCCAGGTGAGAAAACTGAGGCCCAGAGAGGAAAAACTTCCTCGGCCAGCCGGTGTGGCTTCCTGGTCAATTCCCCATCCTACTTCTCTTTGCACCACGAATTTCTAGTCCTTGCTGCCTCAGTTTACGCAGCTGAGAAGTGGGTTTGGGGGGCTCCTCTTACCTTCTGCTCCTCCCAG
Seq C2 exon
CAGGATGTGAAGTACCTGGCCATCAGTGGATTTCTCTTCTTGCGATTCTTCGCACCTGCCATCCTTACCCCAAAGCTGTTTGACCTTCGGGACCAACACGCGGACCCCCAGACTAGCCGCTCACTGCTGTTGCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111344-RASAL1:NM_001193520:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)