GgaINT0006284 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11195265-11195660:-
Coord C1 exon
chr15:11195468-11195660
Coord A exon
chr15:11195403-11195467
Coord C2 exon
chr15:11195265-11195402
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TGAGCTCTGTCCTTGTGCAGGAG
3' ss Score
8.65
Exon sequences
Seq C1 exon
GAGGATCTCCTTCAAGGGGTCCCTGTCGGAAGCCCAGGTGCGAGAGAGCAGCCTGGAGCTGCTGCAGGGCTACCTGGGGGACACGGTGGATGCCATCGTGGGCTCGGTGGACAAGTGCCCCCTCCTGATGAGGGTGGCCTTCAAGCGGCTCCGCAGGCGGGTGGAGGAGCGCTTCCCCTCACCGCAGCACGAG
Seq A exon
GTGGGGGTCCCTGTGGGGCTGGGAGGGCAGCACAGCGCTGGGTGCTGAGCTCTGTCCTTGTGCAG
Seq C2 exon
GAGGTGCAGTACTTCGCCATCAGTGGGTTCCTCTTCCTCCGCTTCTTTGCCCCTGCCGTCCTCACCCCGAAGCTCTTTGGTCTGCGGGAGCAGCATGCTGAGCCCCGCACTGGGCGCACACTCTTGCTGCTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCCCCCTCCTGATGAG
R:
CCCGCAGACCAAAGAGCTTC
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]