MmuINT0132016 @ mm9
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121116252-121120422:+
Coord C1 exon
chr5:121116252-121116444
Coord A exon
chr5:121116445-121120284
Coord C2 exon
chr5:121120285-121120422
Length
3840 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATCTGTGATTCTCTGGCAGGAT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GAGGATCTCCTTCAAGGGCACGCCCACAGAGGAGCAGGTACGGGAGACCAGCCTGGGGCTGCTGACCGGATACCTAGGGTCCGTTGTGGACGCCATCGTGAGCTCTACAGGGCGCTGCCCACTTGCCTTGCGCTTGGCCTTTAAGCAGCTCCAGCGGTGTGTGGAGAAGCGCTTCTCTGGGATAGAGCATCAG
Seq A exon
GTGAGCTGGGCTCCGTAGGGACCGGGGACCTTGTCCAGGGTCACATGCAGAACCAGGTCAACAGTCAAAGGTGACACCAGGACCTAGGATGCTCAGACTTGAGTATGTGTGTCCTGGTGGAGGGACAGTATTCCTGGCAGGACCTGGGACCCTGGGGAACCAATGCTGATGACTGATGAAGGTGATGGTGATCATGGTGATGGCGGTGATGAAGATGATGGTGGTGATGATGTCGATAATGGTAATGGTGATGATAATGGTGGTTGTGATGATGATGGTGGTGGTGGTGGTGATGAGAGCAGAAGGGAGGGGGAAGGACAGGACTAGGATGAAGGCTGAGTGGGTTCGGCAAGTGCCAGACTTTCCCAGCTTGGATACAGAAGGTAGAAACTGGGAGCTATAGTTTTGGGCCAGGTGAGGCACATGAACAGTGCAGATGTAGGATTGGAGGGAGTGGTGGAGACTGTGGCAAAATGTGACACTCCACAGCTTGTCTACAGAGACCACTCAGGCCAATGGTCTACATAGGAATGGCCCCAGTCTCTCTGCTTCTTCAGAACTTTTTTTCTCACTGCTACGTTGGCACTCACAAACACCAGGCATATACTCTGCCACCAAGCCAGGGTCTATCCCTGTCTTCGCTTCTTTGAGATAGGACCTTGCTAAGTTTCCAAGGCAGACCTTGAACTTGCGATTGTCTTGAGTCAGTCTCTCTCTCAAGTATCTGGGACAACAGACAGACCTTTGCCCTAAACTAGGCTGAGCTGGGTATCTTCCTTCCTTCCTTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTCCCTCCTTCCTTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCTTTCCCCCTTCCCCTTCCTTCTTCCTCCCCCTTTTCTCCTCCTCTCTTGCCAGCTTCCAGGATTCTATGTAAAGTCTCCCCATTTTGAAACACAGGGGTTAATTCTCCCATACAAGAGTGATCCACCAATCAAGAGCCTTTTGGAGTCAGTCACCGCATGTCTAAGTTGTCCTGGGCCATGGGCTACCAGCCTGAGATCCCTGTTTTAACAAGGTTCAGTACACAACCTGAGGTGGCTGTCCCGGGGAGCTTGGTGGCACAAGCCTGTAATCTCAGGTACCCAGGAGGCTGCAGCAGGAGGATCTTAAGTTCAAGGCCAGCCTGCCCAACAGGCAGAGATGATTGTTACTATCTTAAGTTACAAAAAAAGCAAGACTCTTTTCTCTTTAAGATTTATTTATATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGTGCAAGCTCAGAGTCCAGGGAGTGTCATATGAGCCCCTGGCATTCCAGACATTTGTGATGTCCCTAATATGGATGCAGAGAGCCAAACCAGGGTCCCCTGATAGGTAGAGCAGTAAGCACTGTTATTCACAGAGGCAACTCTCCAGCCCCAGCCAGACTTTAACTTTTACCCAGTGCTAGGTGCAGACCACTTAGCAGAAAGATCTAGAAATCTGCTGAACACTGGCAACATCACAGCCCAGTTCTTGCAGCCTGAGCTAAGAGCTTTGGATGTATATAACACCTCTCTCTGTGCGTCCTGCTTACAGATGGGGAAACTGATCCCAGAGAGCTTGAGATTTGCTCCCCAGATTCCCCATCCTCCCTCCCACATGGGGTAGAGCTCTGGCCTCCCATCTAGAGGTGGTGGAGGTGGCATTGCTTCCCACTTTGCCTGGCTATCACCTGGGCCGACTCATAGGTGTTAAGTGGGCCACAGCTGAGTAGGGAGGAGCGAAAGAGAGCAGGAGGCCAGCTCCCAAGAATCAGCTCAGCTGGGGAAGCCAACATCAGTGATAGCCACATGTCACCAGTGGGCAGGGACCACAGAATTTCTCAGATCATGAAGGTAGGGAGTCGTGGACAGCCGCCAAATCATGGCATTTTAATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGAAATGTGTCATGTAGCCCAGGCTAGCCTCTTCTAACTTATTACATAGCCAAGGATGACTGTTCCAGTTTGCTTTTTACTGCTGTCCATCATGGAGGGAACTGAAGGCAGGAACCTGGTGGCTGGAGCTGATGCAGAGGCCATGGAGGGGTGCTGCTTACTGGCTTGCTCCCTCAGCTTGCTCAGCTTGCCTTTTTATAGAACCCAGTACCGCCAGCCCAGGGACGGCCCCGCCCACAGTGAGCGGGGTCAGTGGGCGGGACCAGTGGGCAGGACCCTCAGGACCCTCCCACATCTATCATTAGTTAGAAAAAGGCTCCCACAGGTTTGCCCACAGGCAATCTGACCGAGAGACTTTTCTCCACTGAGGGTTCCTCTTTCTAGGTAACTCTAGCTTGTATCAAGTTCACACACACACACACACACACACACACACACACACACACACACTAACTAGCCCAGTGACTTCAAACTTATGACTCCTCTCTGCCTTCACCTCCCACAGGCTGGAGTCACAGGCGCGTGCCACCACAGCCAGTTTCTGCGGCACTGGGGTGAAACCTGGGCTTCCGTGCACACTCCAGCATCAGATGCACCCACAAACTTTTTATTTTTCATTTTGAGACAGGGTATTATTATTAGGTTGCCTGGGCTGCCCTGGAACATACTCTGTAGCCCAGGCTAGCTTTGAACTTGTGACCCTCCTGCCTCAACCTCTGTTTAGATGGGATGATAGGCCTGTGCCACAGCCCTGGCTCACATGTACTTTGATGAACTAATGTTGGGGACCAAAATGACCTGGGGACCTGCCTGGGATGAAGTGGTGGTTTGGGGACAGATCAGGGCTCTGGCTGGGAAAGGCCCCTCTCACGGGAAGCCTTGGGCACAGTCACTGCACTGGGGTGGGGGTGAGGGGCATCGGCAAAGCTGACATGCCCAGGAAGCTAGCACACTCCAGGGTGGCTATTGTCATAGGTGTGACTGACACCCCAAAATTAACACAGGCATGACATATTCCTGGGGGGAGCAAGCTGTGTGGGAAGTCCGCAGAGGGACTCAGTGGGGGAGCTAGCTGTGTGGGAAGTCTGCAGAGGGACTCAGTGGGACTGGGACCAGGTGTACTCAGATGGGCTCTGCAGCCTGACAGCCTGGGCTCTCTACTGAGCCTCAGTTTCCTCAGAAACCAAATGTGGTTGAAGACTGAACGTGCCTCTTGAGGGCTAGAGACACTCATGACCTTGGTGCACTGCCTGTGAGGAGACTGGACAGCAGGAGAGTGGTAAATGACACTGCATCTGCTGTTGAATGCTGGGTAACCTCGGGCCTCAGTTGTTGTCTCTCTAAAACTGGGTGTAACCCATCTCAGAGGAAGTGATGAGTGAAAGGCATTGTGAGCAGAATATGGCCTGTTTTTTTGTAACCATTGGTCACAGATCTGGGTTTGAATCCCGACTCCTCTGTTGTGTGACCCTGAGCAAGCTCCTTGGCCTCTCTGAGGCCAGGAGCAACATCTCTCTCCTCTGGCTCTGTGTTCCAAGCACAGGAGTCTGCTAAAACCAGTTTTGCCAGATCAGTTTCATCACCCCATTTTCCAGAGGGAGAAACTGAGGCAGAGAAGAGAACCCTCCTTGGCAGGCTAGGATAAGCCTTCTGACCCAACTTCCTCTCCCTCTTCTGGACAGCTAGCCTTTGTTGCCTCAGTTTCCCCAGCTGGGATGTGGGCTTCATGGTCTGTCATCTGTGATTCTCTGGCAG
Seq C2 exon
GATGTGAAGTACCTGGCCATCAGTGGCTTCCTCTTTCTGCGGTTCTTTGCGCCTGCCATCCTCACACCGAAACTGTTTGACCTCAGAGACCAGCACGCAGACCCCCAGACCAGCCGTTCCCTGCTGCTGCTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-Rasal1:NM_013832:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(33.7=100)
A:
NA
C2:
PF0061614=RasGAP=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: