GgaINT0006284 @ galGal3
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11513672-11514067:-
Coord C1 exon
chr15:11513875-11514067
Coord A exon
chr15:11513810-11513874
Coord C2 exon
chr15:11513672-11513809
Length
65 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TGAGCTCTGTCCTTGTGCAGGAG
3' ss Score
8.65
Exon sequences
Seq C1 exon
GAGGATCTCCTTCAAGGGGTCCCTGTCGGAAGCCCAGGTGCGAGAGAGCAGCCTGGAGCTGCTGCAGGGCTACCTGGGGGACACGGTGGATGCCATCGTGGGCTCGGTGGACAAGTGCCCCCTCCTGATGAGGGTGGCCTTCAAGCGGCTCCGCAGGCGGGTGGAGGAGCGCTTCCCCTCACCGCAGCACGAG
Seq A exon
GTGGGGGTCCCTGTGGGGCTGGGAGGGCAGCACAGCGCTGGGTGCTGAGCTCTGTCCTTGTGCAG
Seq C2 exon
GAGGTGCAGTACTTCGCCATCAGTGGGTTCCTCTTCCTCCGCTTCTTTGCCCCTGCCGTCCTCACCCCGAAGCTCTTTGGTCTGCGGGAGCAGCATGCTGAGCCCCGCACTGGGCGCACACTCTTGCTGCTCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(35.2=100)
A:
NA
C2:
PF0061614=RasGAP=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCCCCCTCCTGATGAG
R:
CCCGCAGACCAAAGAGCTTC
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]