HsaINT0138488 @ hg38
Intron Retention
Gene
ENSG00000102317 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
Coordinates
chrX:48575168-48576419:+
Coord C1 exon
chrX:48575168-48575283
Coord A exon
chrX:48575284-48576313
Coord C2 exon
chrX:48576314-48576419
Length
1030 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
CTTGTGTCTCCCACACTTAGTCT
3' ss Score
6.61
Exon sequences
Seq C1 exon
GACTTGAACTGCCATGTCCTCTGAAGAAGGAAAGCTCTTCGTGGGAGGGCTCAACTTTAACACCGACGAGCAGGCACTGGAAGACCACTTCAGCAGTTTCGGACCTATCTCTGAGG
Seq A exon
GTGAGACGGGCCATACTCACAATGGGGGTTGGTGAGAGAAAGTCTGGGATCCTTGCATTTCAAGGAGTATTAACTGAAAAGTTAGGACCCACGCCTCCAAATTCTTTTTCTTCCTAAGCCTATGGTGTAGACTAAGGATGAGGGGAAGCGTCTTTGGGATTAGTGGGAGCGCTCCGTTTTCCCTACCTATGCCATCTCCTTTTCCGGCCACCCTTTGCTACTTAACCTTTGGGGTACTGACTGGTCCACATTGCTCCATCTTCTCTCCCTCTCACAGTGGTCGTTGTCAAGGACCGGGAGACTCAGCGGTCCAGGGGTTTTGGTTTCATCACCTTCACCAACCCAGAGCATGCTTCAGTTGCCATGAGAGCCATGAACGGAGAGGTGGGGCCTCCTATCTGCAGAGGGACCTTGTCCCCATCTGCGGCTTCCTTCATTCTTTTTGTTTTTCCCTCTGTGTCTGCTCGGGGCAGCGTGGCCACCAAGCCCCGCAGTGCCCACTCACAGGAGCATGACTGCCTTTTGTTCTAGGGGGTGGAGGGCAGCGGCAGACAGAGCCTGGCCGCCTGGGAGGCGACGACTGGTCCTGCATGAGGCCGAGAAGCCACCTGTGGATGGTTGACCTGCCTTGGGCTTAGGTAGTAGAGTCTGCAGACCTGTGGGCCTGGCCCGGAGAGGACCTCGTGAGTCTTCTGACATGGACTCTGAAGCCTCAAACCAAGAGAGGTGTCTGTCTAGCCCTGATAGTCGGGCAGCTTAGAGGAGTGGGGAGGAGAACTCAGCCTGAGTTCAGTCAAGATGTAAGTAGTAGCAAGGGGAACATGGTGCATTCAGGTCATTTTGTGTGGGATTCTATAGCTCCTGATGAAGCCATTCTGGGGTAAAGGAGCTTATTCTGGAACATGGCACCCAGAACCTGGTGCCCAGCAGGAATTTTTGGCCTCTTTTGCCCACTTACCCTTGCCTGCTCTTCCCTCACCATTGCCCTGACTGACTGCCAACCCATCATCCTTGTGTCTCCCACACTTAG
Seq C2 exon
TCTCTGGATGGTCGTCAGATCCGTGTGGATCATGCAGGCAAGTCTGCTCGGGGAACCAGAGGAGGTGGCTTTGGGGCCCATGGGCGTGGTCGCAGCTACTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102317:ENST00000489344:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(38.0=77.1)
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=19.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGAACTGCCATGTCCTCT
R:
CTCTAGAGTAGCTGCGACCAC
Band lengths:
222-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development