MmuINT0132754 @ mm9
Intron Retention
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:7721699-7722198:-
Coord C1 exon
chrX:7722081-7722198
Coord A exon
chrX:7721806-7722080
Coord C2 exon
chrX:7721699-7721805
Length
275 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TCTTTCTGCCCCTCCCCCAGTGG
3' ss Score
8.89
Exon sequences
Seq C1 exon
GACTTGCCTTCTGCCATGTCGTCTGAAGAAGGGAAACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGAACAGGCACTTGAAGACCACTTCAGCAGCTTTGGGCCTATCTCTGAGG
Seq A exon
GTGAGCCATGGACCAGCCCCGGGGTTGAGGGTTGGTGGAGAAGAGCTAGTCTAGAACTAAAACCTGAAATTCTCTTTAACTTCCATGTCTGTACGGTAACGGTTAGGCTGAAATAAATTCAGTTGGATACAGGATTTTTTTTTTTTTAAACAGGAGCGGGGGGGTTGGCGGGGTCCTAATTCTCCCAAGTGCTATTTGATCTGTGGCTGTGCCTGGCTATTACTTTCTACTTAGATGTTAGGGTTCTAACATTTGTCTTTCTGCCCCTCCCCCAG
Seq C2 exon
TGGTTGTTGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTTGGCTTCATCACCTTCACAAACCCAGAGCATGCCTCAGATGCGATGAGAGCTATGAATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167-Rbm3:NM_016809:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(38.0=77.1)
A:
NA
C2:
PF0007617=RRM_1=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTTCTGCCATGTCGTC
R:
TCCATTCATAGCTCTCATCGCA
Band lengths:
220-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: