HsaINT0138662 @ hg19
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
Coordinates
chr2:161141506-161143595:-
Coord C1 exon
chr2:161143480-161143595
Coord A exon
chr2:161141556-161143479
Coord C2 exon
chr2:161141506-161141555
Length
1924 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTTCTTTCTCTTTCCCATAGGCT
3' ss Score
13.37
Exon sequences
Seq C1 exon
CCCCCACAGAACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTT
Seq A exon
GTAAGTCCTTTCTTGAAACTTTGCGGGGTGGGGGAGGGGGTGTGATCTTGAATGCCCACATGAAAAGTAACACAAAAAGGCATCTTGACTTGGCTGCACACTTCTGAAATAGGTGCCAGGATTAAATCTTCCTTTCGGTACATTATAATTCAAGTGATGCCAAATTAAAATTCTTTTCATTATATATGGTGATAACAGAGTGATTCTCCAGATGGACCGATAGGTGGTGGAAGCAGCTGTGTTTACCAGCTAGCTACACATGAAGTAAAAGAGCATTCTAAATTGCCATAAGAAAAACACAAGTGATTTGGGTTTGTTTTTGGTTTTTTTCAGAAACAGGGTTTCTGTAGGCTAGGCGCGGTGGCTCACACCTATAATCCTAGCACTTTGGGAGGCCAAGGCAGGCAGATCACCTGAGATCAGGAGTTAGAGATCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCCTGCGTGGTGGTCCATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGCTGCAGCCCGGGAGGCAGAGGCTGCAGTGTTCCAAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAACAAAATAAAAAAAAAAAAAAAAGAAAGGAAGAAACATGGTCTCTGTTGCCCAGGCTGGAGTCCAGTGGTGTGGTTATAGCCTACCACAACCTTGAACTCCTGTGCTCAAGCAGTCCTCCCACCTCAGCCTCCTATGTAGCTGAGACGACAGGGACATGCCACCACTCCTGGCTAATTTTTAAAAATTTTTATTTTTTTATTTATTTTTTATTTTTGAGATGGAGTCTTGCTCTGTCGCTCAGGCTGGAGGGCAGTGGCACGATCTCCGCTCACTGCAAGCTCTGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCATGCGCGGCTAATTTTTTGTATTTTTACTAGAGATGGGGTTTCACCGTGTTAGTCGGGATGGTCTCAATCTCCTGGCCTCATGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCATCGTGCTCGGCCTAATTTTTTAAAATTTTTATAGAGATAGGATCTAACTATGTTGCCCAGGCTAGCATGGTTTCTTAGAGGGGTTTATATTTATAATATTTAGAAGTTATCCTAAATAGTAATCTAAATATTTATATATAAATAGTACATTTATCACTGAGTTGGGGTTTTTTTCACCTCTCTTTTGAATAGTTTTTTTTTTAATTAAAACTCTCAATTTCGTAATAAAATGTTGGACGTCCATTTCCCTGTATTGACTTTCCATGAATTATTATTTTAAAAACAATAACATATTGATCCAAGAATGTCTAGGGAAAATGTTCTAGAATCTGCACTGTCCAATAACAGCCACCAGCCACAGGTGGCTCTCTGAGCACTTGAAACGTAGCTAGTATGCTAGAGAGATTGATTTTTTATGTAGTTTTAAATAGCTGCATGTGGCTTATGACTATCACATGGGACAGTGCAGGTCCAGAGATTAATTTTCATATTTATAGTCATTTTGACTAACAGAAACTCCCAATTTTATCAAATGCTACTAGACTCTAAGTACAAATTCCCCTCCCTCCCCTTTTTTTTTAAGAGACAGGGGTCTCCTTCTGTTGCCCAGGCTGGAGTGCAGTGATGTAATCATAGCTAACTACAGCCTCGAACTCCTGGGCTTCAAAAGGATCTTCCCACCTCAGCCTCCCCAGCAGCTGGGACTACAGGTGCACACCACCACACCTGGCTAAAAATAGAATTTTTAAATCATGCCTTTCTAGATGAATGTTTATATTTCTTTCTCTTTCCCATAG
Seq C2 exon
GCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-RBMS1:NM_016836:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)