MmuINT0132937 @ mm9
Intron Retention
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60600327-60601399:-
Coord C1 exon
chr2:60601293-60601399
Coord A exon
chr2:60600377-60601292
Coord C2 exon
chr2:60600327-60600376
Length
916 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTTCTGCTTCCTTCCATAAGGCT
3' ss Score
5.99
Exon sequences
Seq C1 exon
CTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAGTACATCCCTAACGGGCGGCCATGGCCCAGAGATGGAGAG
Seq A exon
GTGAGACTCTGAGGCCTTCCTTGACAGTTGAGTGTGGGTGTGTGATCCTGAGCGCTCTCATGGAAGGCCCTGCAAGGGTGCCGTGGCTGGGCTGCCACACTTCTGAAACAGCCCAGACTAAACCTTCCTTCTGGTGCTGCTTCCTCAGGGGCTGACGGCAGCTGTCAGGTGCAGGAGTCACTGGGTGCCCATTCCCCAAGAGGGTAGGTAGATGACAGGAACCAGCCGCACTGTGCTTAGTAAAAGGATGACTGGGAACGTGTTTTGAGCACAGCGGGTTCAGTTTTAGATACAGCTTTTTCCAATAGGTTTACATTAATAGTATTCAGGAATCTGTCCTTAATATCGAGATAAATGGTATATTTGTCATTGAGAATTTAGTTTTACATTTTTGCTTTTTTGTTATTATTGTTATTGAAAAAAATGTTGTGCCATACTGATATATTCTGCTCGTGGTTTTCCCTCCCCACCTCCACACATTGCTTTTTAAACAAATAGGCAAACAGTCTTTAGAAGCTTTCTTTAAACAAACAGAAACAAAAACCTTCAATTTTTTTTAATCCAACATTGGGCTTCCTCTTCCTTGTATTTATTTCAATAAGTTTTTATGTTTAAAGTTGTCATAAGGAACCCAGAATGTGTGGAGAAAATACCTTGGACTTGTGCTGTCCAGTGTCAGCCACATGGGGCCCTCTGAGCGTGTGGTGTCTAGCTATTCCACCGGAGAGATTGGTTTCTGTTTAATTTTCCGTAGCTTCCTGCAGTAATGGATGTCGTGTGGGGCAGCACAGTGGAACTCTCACTTTTATCACATGTGCCTTTTACCATCTTGCGCTCTGGGGACTGTACAAAATGCAGTTTCAGACATCATCTTCCTAGATGGGTTCTCATGGTTCCTTCTGCTTCCTTCCATAAG
Seq C2 exon
GCTGGAATGACACTCACTTATGACCCGACTACAGCTGCTCTACACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-Rbms1:NM_020296:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.353
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=PU(26.0=94.4)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: