HsaINT1028999 @ hg38
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160284995-160287084:-
Coord C1 exon
chr2:160286969-160287084
Coord A exon
chr2:160285045-160286968
Coord C2 exon
chr2:160284995-160285044
Length
1924 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTTCTTTCTCTTTCCCATAGGCT
3' ss Score
13.37
Exon sequences
Seq C1 exon
CCCCCACAGAACCTTTATTGTGTAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAACCCAAACAAATACATCCCTAATGGAAGACCATGGCATAGAGAAGGAGAGGTGAGACTT
Seq A exon
GTAAGTCCTTTCTTGAAACTTTGCGGGGTGGGGGAGGGGGTGTGATCTTGAATGCCCACATGAAAAGTAACACAAAAAGGCATCTTGACTTGGCTGCACACTTCTGAAATAGGTGCCAGGATTAAATCTTCCTTTCGGTACATTATAATTCAAGTGATGCCAAATTAAAATTCTTTTCATTATATATGGTGATAACAGAGTGATTCTCCAGATGGACCGATAGGTGGTGGAAGCAGCTGTGTTTACCAGCTAGCTACACATGAAGTAAAAGAGCATTCTAAATTGCCATAAGAAAAACACAAGTGATTTGGGTTTGTTTTTGGTTTTTTTCAGAAACAGGGTTTCTGTAGGCTAGGCGCGGTGGCTCACACCTATAATCCTAGCACTTTGGGAGGCCAAGGCAGGCAGATCACCTGAGATCAGGAGTTAGAGATCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCCTGCGTGGTGGTCCATGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGCTGCAGCCCGGGAGGCAGAGGCTGCAGTGTTCCAAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAACAAAATAAAAAAAAAAAAAAAAGAAAGGAAGAAACATGGTCTCTGTTGCCCAGGCTGGAGTCCAGTGGTGTGGTTATAGCCTACCACAACCTTGAACTCCTGTGCTCAAGCAGTCCTCCCACCTCAGCCTCCTATGTAGCTGAGACGACAGGGACATGCCACCACTCCTGGCTAATTTTTAAAAATTTTTATTTTTTTATTTATTTTTTATTTTTGAGATGGAGTCTTGCTCTGTCGCTCAGGCTGGAGGGCAGTGGCACGATCTCCGCTCACTGCAAGCTCTGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCACCACCATGCGCGGCTAATTTTTTGTATTTTTACTAGAGATGGGGTTTCACCGTGTTAGTCGGGATGGTCTCAATCTCCTGGCCTCATGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAACCATCGTGCTCGGCCTAATTTTTTAAAATTTTTATAGAGATAGGATCTAACTATGTTGCCCAGGCTAGCATGGTTTCTTAGAGGGGTTTATATTTATAATATTTAGAAGTTATCCTAAATAGTAATCTAAATATTTATATATAAATAGTACATTTATCACTGAGTTGGGGTTTTTTTCACCTCTCTTTTGAATAGTTTTTTTTTTAATTAAAACTCTCAATTTCGTAATAAAATGTTGGACGTCCATTTCCCTGTATTGACTTTCCATGAATTATTATTTTAAAAACAATAACATATTGATCCAAGAATGTCTAGGGAAAATGTTCTAGAATCTGCACTGTCCAATAACAGCCACCAGCCACAGGTGGCTCTCTGAGCACTTGAAACGTAGCTAGTATGCTAGAGAGATTGATTTTTTATGTAGTTTTAAATAGCTGCATGTGGCTTATGACTATCACATGGGACAGTGCAGGTCCAGAGATTAATTTTCATATTTATAGTCATTTTGACTAACAGAAACTCCCAATTTTATCAAATGCTACTAGACTCTAAGTACAAATTCCCCTCCCTCCCCTTTTTTTTTAAGAGACAGGGGTCTCCTTCTGTTGCCCAGGCTGGAGTGCAGTGATGTAATCATAGCTAACTACAGCCTCGAACTCCTGGGCTTCAAAAGGATCTTCCCACCTCAGCCTCCCCAGCAGCTGGGACTACAGGTGCACACCACCACACCTGGCTAAAAATAGAATTTTTAAATCATGCCTTTCTAGATGAATGTTTATATTTCTTTCTCTTTCCCATAG
Seq C2 exon
GCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250:ENST00000348849:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains