RnoINT0125317 @ rn6
Intron Retention
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46812987-46814037:-
Coord C1 exon
chr3:46813931-46814037
Coord A exon
chr3:46813037-46813930
Coord C2 exon
chr3:46812987-46813036
Length
894 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTTCTCCTTCCTTCCATAAGGCC
3' ss Score
6.68
Exon sequences
Seq C1 exon
CTCCTACAGAACCTTTACTGTGCAAGTTTGCGGATGGAGGACAGAAGAAGAGACAGAACCCAAACAAGTACATCCCTAATGGGCGGCCATGGCCCAGAGAAGGAGAG
Seq A exon
GTGAGACTCTAAGGCCTTCCCTGAAACTTGAGTGTGGGTGTGTGATCCGGGGGACTCTCACTGTAAAGCCCTGCAAGGCATCTTGGCTGGACCACCATGCTTCTGAAACACCCAGACTAAACCTCCCTTCTGGTGCCATTCCCCCACTAGAGCTGACAGCAGCTGTCTCTGGTGCTGGAGTTACTGGGTGCCCCAGGAGGGCAGGTAGATGACGGTCCAGCCACACTGCGCTTAGTAAAAGGGTGACTGTGAACATGTTTTGAGCGTGGAAGGTTTCAGTTTTAGATACAGCTTTTTCAGTAGGTTTACAAAAATAGTATTCAGAAATCTGTTCTTAACATTAAAATAAATATTTGTCATTGAGAATTTAGTTTTATATTTGGGGTTTTTTTTTTTCATACTGAAAAAATGTTGTGCAGACCGATGTATTCTGATCCTGGTTTTCCCTCCCCACCTCCACACGTTGGCTTTCTAAGCAAATGGGCAAACAATCTTTTGAAGCTTTCTTTAAACAGACAGGGGAAAAAAAACTTCAATTTTTTAATGCAGCATTGGGCTACCTCTTGCTTGTATTTATTTCAGCAAACCTTTATGTTTAAAGGTATCGTAAGGTACCTGGAATGTGTGGAGAATAGATGGTCAATGTGCGCTGTTCAGTGTCAGGCACACAGGCCCTCTGAGCATGTGGTGTGTGGCCGTTTCACCAGAGAGATTGGTTTCTGTTCCAGTAGCACCCTGCAGCAGTGGCCGCCATGTGGGGTGGCACAGTGGAACTTGCCACTTGTATCACATGTGACTTTTACCTTCTTATGCTCTGGGGAGTGTACAAAATGCAGTATGAGACACCTCCTGCCTCGATGGGTTCTCACGGTTCCTTCTCCTTCCTTCCATAAG
Seq C2 exon
GCCGGAATGACACTCACTTACGACCCGACTACAGCTGCTCTACACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482:ENSRNOT00000011682:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]