GgaINT0046219 @ galGal3
Intron Retention
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23342670-23343694:+
Coord C1 exon
chr7:23342670-23342776
Coord A exon
chr7:23342777-23343644
Coord C2 exon
chr7:23343645-23343694
Length
868 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTCCACTTATTTTTTTAAAGGCT
3' ss Score
7.02
Exon sequences
Seq C1 exon
TTCCTGCAGAACCTTTATTGTGCAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAATCAGAATAAATACATACAGAATGGAAGAGCATGGCACAGAGAAGGCGAG
Seq A exon
GTGAGACTTGTAAGTCCTCCCTTCAAGCTCCGGTGTGGGTGTACAATAATGAATACTTATGGAAATGATAGGCATTGAGACTTCTTGGCTCGGCTCTTTGGCATATTAAAAATATGCAAGCAGCCCTCACCTGACAGTTTGCAATTCTATGAACTGTTTAACTGTATCTTCCTTAAGAGAAAAAAAAACAAAATATAGAACACCAAATTGTACCTTATTAAAGTGAACACTAAAATCTCCTTCACTTTGGTCGGGAGTATATCTGAAATATCTCTGATATTATAAAGCTTTCTGAAACGTAACTTTATTTACATCTAGTAGGTAATCCCTTTTGTTCATGCAGAACTGAAGCACACAGCCATTTTCTAAGATTAAAACAGTGCAGTGCGGCATTACATTTTTCTGTTTGTTGCAGCTTTTTTTTAATCTTGAATATTCAAGATAATACTTTCATAGGCTGACTGTGTTTACCAAGCCTGGAGACCTCATGTGTATGAGACAACAAAATTCAAATGTGCCTTCTGAAAAATGGGTTCCCCGTTCATTTTCATGGTTAATATATTATGTGCCCAGTGTAGCCCTAGTATAGTCACCCTTGTGCTCCACCTCTCAAACTCGTACATGTTATCTAAGCCAAGTATTTTATGGATTGCATTTTGTTCTTCTCAATGGGAACTTTTTAGCCAATATCACAGACTCTCTTTACTTATAATTACTTCTATCAATTAACCTTTCCCAAACTGTAGGATAACCAACTGTATCAGTACAAATTTTCAGTTAAAATTAAGACAGCTAATTAATGAGTATGAGAAATAATTTACAAGCAAGATGAATTATGTCAATTCTCTTTCCACTTATTTTTTTAAAG
Seq C2 exon
GCTGGAATGACACTCACTTATGATCCAACCACAGCTGCTTTACAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000033119:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=FE(23.3=100)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]