HsaINT0138663 @ hg19
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:9907]
Coordinates
chr2:161141286-161141555:-
Coord C1 exon
chr2:161141506-161141555
Coord A exon
chr2:161141380-161141505
Coord C2 exon
chr2:161141286-161141379
Length
126 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
GGCTTTTGTGTTTGTTCTAGATT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGG
Seq A exon
GTATGTCGTTAAAATAAATCCATAATGGCTTGAGGGAAAATGTGAAGGTGGAAAATATCAGACATTTGTTCCATGAATTATTCTATTTAAAGGATTACTTAATAAAGGCTTTTGTGTTTGTTCTAG
Seq C2 exon
ATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-RBMS1:NM_016836:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGACACTTACTTACGACCCA
R:
GGTAGGCAGATACAGGAGATGC
Band lengths:
139-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)