GgaINT0046220 @ galGal3
Intron Retention
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23343645-23343880:+
Coord C1 exon
chr7:23343645-23343694
Coord A exon
chr7:23343695-23343786
Coord C2 exon
chr7:23343787-23343880
Length
92 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
AATATTTCTGTATTTTCTAGATT
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCTGGAATGACACTCACTTATGATCCAACCACAGCTGCTTTACAAAATGG
Seq A exon
GTATGTTAAGTGCTGGCACACTAAGAAAAAAATGTTTGCATTATGAAAGTTGCATAGAACTGGCATTTAATCAATATTTCTGTATTTTCTAG
Seq C2 exon
ATTTTATCCATCACCCTACAGTATTACAGCAAACAGAATGATCACTCAAACATCTATTACGCCATATATTGCTTCTCCGGTTTCCACATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000033119:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=FE(10.0=100)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAATGACACTCACTTATGA
R:
CTGGTATGTGGAAACCGGAGA
Band lengths:
144-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]