GgaINT0046220 @ galGal4
Intron Retention
Gene
ENSGALG00000011132 | RBMS1
Description
RNA-binding motif, single-stranded-interacting protein 1 [Source:RefSeq peptide;Acc:NP_990355]
Coordinates
chr7:21255071-21255306:+
Coord C1 exon
chr7:21255071-21255120
Coord A exon
chr7:21255121-21255212
Coord C2 exon
chr7:21255213-21255306
Length
92 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
AATATTTCTGTATTTTCTAGATT
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCTGGAATGACACTCACTTATGATCCAACCACAGCTGCTTTACAAAATGG
Seq A exon
GTATGTTAAGTGCTGGCACACTAAGAAAAAAATGTTTGCATTATGAAAGTTGCATAGAACTGGCATTTAATCAATATTTCTGTATTTTCTAG
Seq C2 exon
ATTTTATCCATCACCCTACAGTATTACAGCAAACAGAATGATCACTCAAACATCTATTACGCCATATATTGCTTCTCCGGTTTCCACATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000018146:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072716=Cytadhesin_P30=FE(9.8=100)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAATGACACTCACTTATGA
R:
CTGGTATGTGGAAACCGGAGA
Band lengths:
144-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]