HsaINT1029000 @ hg38
Intron Retention
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160284775-160285044:-
Coord C1 exon
chr2:160284995-160285044
Coord A exon
chr2:160284869-160284994
Coord C2 exon
chr2:160284775-160284868
Length
126 bp
Sequences
Splice sites
5' ss Seq
CGGGTATGT
5' ss Score
8.79
3' ss Seq
GGCTTTTGTGTTTGTTCTAGATT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCTGGAATGACACTTACTTACGACCCAACTACAGCTGCTATACAGAACGG
Seq A exon
GTATGTCGTTAAAATAAATCCATAATGGCTTGAGGGAAAATGTGAAGGTGGAAAATATCAGACATTTGTTCCATGAATTATTCTATTTAAAGGATTACTTAATAAAGGCTTTTGTGTTTGTTCTAG
Seq C2 exon
ATTTTATCCTTCACCATACAGTATTGCTACAAACCGAATGATCACTCAAACTTCTATTACACCCTATATTGCATCTCCTGTATCTGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250:ENST00000348849:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGACACTTACTTACGACCCA
R:
GGTAGGCAGATACAGGAGATGC
Band lengths:
139-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains